CF832449

Overview
NameCF832449
Unique NameCF832449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832449_ssr219 microsatellite CF832449_ssr219:219..233. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CF832449 vs. ExPASy Swiss-Prot
Match: U131_ARATH (UPF0131 protein At3g02910 OS=Arabidopsis thaliana GN=At3g02910 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.459e-29
Identity = 72/128 (56.25%), Postives = 84/128 (65.62%), Query Frame = -1 
Query:  370 YRVPFLLNIPGSGHPVTGELYAVSAYGLSRMDELEGTSRGHYQRLGPIRVT--RXXXXXXXXXXXXXXXXXXXXAYFADRSYEMELWKKSGKLGFRWYGEKEAKGYVKRKDRPQNLSFLEHIRIFLSS 747
            YRVPFLLN PGSG+ V GELYAVS  GLSR+DELEG SRGHY R  PIR+                        AY+A +SYE ELW+++    F  Y E EA+GYVKR DRPQ+LSFL+HIRIF+SS
Sbjct:   53 YRVPFLLNKPGSGYHVNGELYAVSPRGLSRLDELEGISRGHYIRQ-PIRLAAAEEEEEEEGDLETEAPSSCVVEAYYAHKSYEEELWRRNRGRSFGAYTENEARGYVKRNDRPQHLSFLDHIRIFVSS 179
The following BLAST results are available for this feature:
BLAST of CF832449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
U131_ARATH3.459e-2956.25UPF0131 protein At3g02910 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01O02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832449 ID=CF832449; Name=CF832449; organism=Citrus sinensis; type=EST; length=747bp
TTTTTTTTTTTTTTTTTCCGCGAAATCAGTTCTTTTATTTATTCCCTCTT
GTATTATTATTAAAGAATAACAAACATCTACTACAAACTCACGTTAACAA
AACCTTCAATGGGGGATGGAATGGAATCCACAAATAAAATTATTTCACTA
ATAGATAGACCCAAGCTTTAATGAAACTTTTTGAAAATCGAAGGGGCTGC
TACAAAATGATTATCTTAATCATCATCATCATCCTCTAAACAGCTAATTA
ACAACAAAATTATAGATTTAAAAAAAAAAAGTATAGACCACCAGAGCACT
AACTAATAAGGATTAAAATTATAACATGACGGATAATAAATATAATAAGA
ATCATTGATCGGTAGAGGATGATGAAAGAAAGATGCGAATATGTTCCAGG
AAAGAAAGATTCTGGGGGCGATCTTTCCTCTTAACGTAGCCTTTGGCTTC
TTTTTCGCCATACCAACGAAACCCTAACTTTCCGCTCTTCTTCCACAGCT
CCATTTCGTAGCTCCTGTCCGCAAAATAAGCCTCAGCCTCAGCCTCAGCT
TCATCGTCGGAGTCATCGTCGGCCTCCGCCGCCACCGCCGCCCTGGTTAC
TCTGATGGGGCCGAGCCTTTGGTAGTGGCCGCGGGAGGTGCCTTCGAGCT
CGTCCATCCTGGATAGGCCGTAGGCGGAGACGGCGTAAAGCTCGCCGGTG
ACGGGGTGGCCGGAGCCGGGGATGTTGAGGAGGAAAGGGACCCGGTA
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