CF832495

Overview
NameCF832495
Unique NameCF832495
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832495 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.974e-46
Identity = 97/142 (68.31%), Postives = 106/142 (74.65%), Query Frame = -3
Query:  185 GQCWIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 610
            G   IILAGRFKGKRVVFLKQL SGLLLV+GPFK+NGVPLRRVNQ+YVI TSTKVDISGVNV+KFDDKYF K+                           KDDQK+VD  L+KAIE VP+LKAYLGARFSL+AGMKPHELVF
Sbjct:   93 GTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234          
BLAST of CF832495 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.974e-46
Identity = 99/142 (69.72%), Postives = 105/142 (73.94%), Query Frame = -3
Query:  185 GQCWIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 610
            G   IILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K                            KDDQK+VDA LIKAIEAVP+LK YLGARFSL+ GMKPHELVF
Sbjct:   92 GTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233          
BLAST of CF832495 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.974e-46
Identity = 99/142 (69.72%), Postives = 105/142 (73.94%), Query Frame = -3
Query:  185 GQCWIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 610
            G   IILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K                            KDDQK+VDA LIKAIEAVP+LK YLGARFSL+ GMKPHELVF
Sbjct:   92 GTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233          
BLAST of CF832495 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.183e-45
Identity = 96/142 (67.61%), Postives = 104/142 (73.24%), Query Frame = -3
Query:  185 GQCWIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 610
            G   IILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTSTK+DISGVN +KFDDKYF K                            K+DQK+VDA LIK+IEAVP+LK YLGARFSL  GMKPHELVF
Sbjct:   92 GTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233          
BLAST of CF832495 vs. ExPASy Swiss-Prot
Match: RL6A_YEAST (60S ribosomal protein L6-A OS=Saccharomyces cerevisiae GN=RPL6A PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 1.899e-29
Identity = 73/142 (51.41%), Postives = 85/142 (59.86%), Query Frame = -3
Query:  185 GQCWIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 610
            G   I+LAGRF+GKRVV+LK L    LL+SGPFK+NGVPLRRVN  YVI TSTKV + GVNV+KF+ +YFAKE                            +DQK VD  LI  I+  P LK YL A FSL+ G KPH L F
Sbjct:   37 GTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 176          
BLAST of CF832495 vs. ExPASy Swiss-Prot
Match: RL6B_YEAST (60S ribosomal protein L6-B OS=Saccharomyces cerevisiae GN=RPL6B PE=1 SV=4)

HSP 1 Score: 127.102 bits (318), Expect = 7.216e-29
Identity = 72/142 (50.70%), Postives = 85/142 (59.86%), Query Frame = -3
Query:  185 GQCWIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 610
            G   I+LAGRF+GKRVV+LK L    LLV+GPFK+NGVPLRRVN  YVI TSTKV + GVNV+KF+ +YFAKE                            +DQK VD  L+  I+  P LK YL A FSL+ G KPH L F
Sbjct:   37 GTVLILLAGRFRGKRVVYLKHLEDNTLLVTGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQTKEIKTERVEDQKVVDKALLAEIKKTPLLKQYLSASFSLKNGDKPHLLKF 176          
BLAST of CF832495 vs. ExPASy Swiss-Prot
Match: RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.274e-25
Identity = 71/143 (49.65%), Postives = 85/143 (59.44%), Query Frame = -3
Query:  185 GQCWIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 610
            G   IIL GR +GKRVVFLKQL SGLLLV+GP  IN VPLRR +Q +VI TSTKVDIS V + K   D YF K+                           K DQK+VD  ++  I+AVP L+ YL ++FSL  GM PH+LVF
Sbjct:  155 GTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKK-QLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDLQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 296          
BLAST of CF832495 vs. ExPASy Swiss-Prot
Match: RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5)

HSP 1 Score: 115.931 bits (289), Expect = 1.664e-25
Identity = 70/143 (48.95%), Postives = 86/143 (60.14%), Query Frame = -3
Query:  185 GQCWIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 610
            G   IIL GR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTKVDIS V + K   D YF K+                           K DQK+VD+ ++  I+AVP L+ YL ++FSL  GM PH+LVF
Sbjct:  157 GTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKK-PLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDSQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 298          
BLAST of CF832495 vs. ExPASy Swiss-Prot
Match: RL6_SCHPO (60S ribosomal protein L6 OS=Schizosaccharomyces pombe GN=rpl6 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 3.706e-25
Identity = 66/143 (46.15%), Postives = 87/143 (60.84%), Query Frame = -3
Query:  185 GQCWIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTST-KVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 610
            G   I+LAGRF+GKRVV L QL    L+V+GP+K+NGVP+RRVN  YVI TS  K+D+SGV+V+KF   YFAK+                             DQK+VDA L+ AI+A+P++K YL A F+L  G +PH + F
Sbjct:   55 GTVCILLAGRFRGKRVVVLSQLED-TLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEKFTKAYFAKQ-KRSGPVKKDEAFFAENAPKNALPAERIADQKAVDAKLLPAIKAIPNMKEYLAASFALSNGDRPHLMKF 195          
BLAST of CF832495 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 3.706e-25
Identity = 65/143 (45.45%), Postives = 86/143 (60.14%), Query Frame = -3
Query:  185 GQCWIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 610
            G   IIL GR +GKRV+FLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTK+DISGV + +   D YF K+                             DQK+VD+ +++ I+AVP L+ YL + F+L  G+ PH+LVF
Sbjct:  143 GTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEISEQRKV-DQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 284          
The following BLAST results are available for this feature:
BLAST of CF832495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RL6_MESCR4.974e-4668.3160S ribosomal protein L6 OS=Mesembryanthemum cryst... [more]
RL63_ARATH4.974e-4669.7260S ribosomal protein L6-3 OS=Arabidopsis thaliana... [more]
RL62_ARATH4.974e-4669.7260S ribosomal protein L6-2 OS=Arabidopsis thaliana... [more]
RL61_ARATH7.183e-4567.6160S ribosomal protein L6-1 OS=Arabidopsis thaliana... [more]
RL6A_YEAST1.899e-2951.4160S ribosomal protein L6-A OS=Saccharomyces cerevi... [more]
RL6B_YEAST7.216e-2950.7060S ribosomal protein L6-B OS=Saccharomyces cerevi... [more]
RL6_MOUSE1.274e-2549.6560S ribosomal protein L6 OS=Mus musculus GN=Rpl6 P... [more]
RL6_RAT1.664e-2548.9560S ribosomal protein L6 OS=Rattus norvegicus GN=R... [more]
RL6_SCHPO3.706e-2546.1560S ribosomal protein L6 OS=Schizosaccharomyces po... [more]
RL6_PIG3.706e-2545.4560S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01P06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832495 ID=CF832495; Name=CF832495; organism=Citrus sinensis; type=EST; length=627bp
TTTTTTTTTTTTTATCATTAATCAATTGTACTTTAAAAAAAGCCTTTCAT
TTGCCTAACATCATACCAAAATTTAGATGTCTGATCCCATGAAACGAAGA
TTACAACTGCTAAAATAAATTTCAAACAAAACATAACAAGTAGGAAAAAG
CAAAGCAATCCTAAATTGTTACAACATGTTTTCAGAAGACAAGTTCATGA
GGTTTCATGCCGGCCCTGAGGGAAAACCTAGCACCAAGGTAAGCCTTCAA
GTCTGGAACAGCTTCAATGGCCTTGATCAATGGTGCATCAACAGACTTCT
GATCATCCTTCTTCTCCTGAGGAAGCGACTTCTTCTCCTCTTTCTCTGAC
TCAAAGAACTCATTCTCTCCTTTCTTCTTCTTCCTCTCGACTTCCTTGGC
AAAATACTTATCATCGAACTTATCCACATTCACTCCGGAGATATCAACTT
TGGTAGAAGTTCCAATCACGTAAGACTGGTTCACACGTCGTAAAGGAACA
CCATTGATCTTAAATGGCCCAGAAACTAGAAGCAACCCAGATGGAAGCTG
CTTCAGGAACACAACTCTCTTACCCTTGAACCTTCCAGCTAGTATAATCC
AGCACTGTCCCTGGGGTGATGCTTGCT
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