CF832495
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832495 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 4.974e-46 Identity = 97/142 (68.31%), Postives = 106/142 (74.65%), Query Frame = -3 Query: 185 GQCWIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 610 G IILAGRFKGKRVVFLKQL SGLLLV+GPFK+NGVPLRRVNQ+YVI TSTKVDISGVNV+KFDDKYF K+ KDDQK+VD L+KAIE VP+LKAYLGARFSL+AGMKPHELVF Sbjct: 93 GTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234
BLAST of CF832495 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 4.974e-46 Identity = 99/142 (69.72%), Postives = 105/142 (73.94%), Query Frame = -3 Query: 185 GQCWIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 610 G IILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K KDDQK+VDA LIKAIEAVP+LK YLGARFSL+ GMKPHELVF Sbjct: 92 GTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233
BLAST of CF832495 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 4.974e-46 Identity = 99/142 (69.72%), Postives = 105/142 (73.94%), Query Frame = -3 Query: 185 GQCWIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 610 G IILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K KDDQK+VDA LIKAIEAVP+LK YLGARFSL+ GMKPHELVF Sbjct: 92 GTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233
BLAST of CF832495 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 7.183e-45 Identity = 96/142 (67.61%), Postives = 104/142 (73.24%), Query Frame = -3 Query: 185 GQCWIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 610 G IILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTSTK+DISGVN +KFDDKYF K K+DQK+VDA LIK+IEAVP+LK YLGARFSL GMKPHELVF Sbjct: 92 GTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233
BLAST of CF832495 vs. ExPASy Swiss-Prot
Match: RL6A_YEAST (60S ribosomal protein L6-A OS=Saccharomyces cerevisiae GN=RPL6A PE=1 SV=2) HSP 1 Score: 129.028 bits (323), Expect = 1.899e-29 Identity = 73/142 (51.41%), Postives = 85/142 (59.86%), Query Frame = -3 Query: 185 GQCWIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 610 G I+LAGRF+GKRVV+LK L LL+SGPFK+NGVPLRRVN YVI TSTKV + GVNV+KF+ +YFAKE +DQK VD LI I+ P LK YL A FSL+ G KPH L F Sbjct: 37 GTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 176
BLAST of CF832495 vs. ExPASy Swiss-Prot
Match: RL6B_YEAST (60S ribosomal protein L6-B OS=Saccharomyces cerevisiae GN=RPL6B PE=1 SV=4) HSP 1 Score: 127.102 bits (318), Expect = 7.216e-29 Identity = 72/142 (50.70%), Postives = 85/142 (59.86%), Query Frame = -3 Query: 185 GQCWIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 610 G I+LAGRF+GKRVV+LK L LLV+GPFK+NGVPLRRVN YVI TSTKV + GVNV+KF+ +YFAKE +DQK VD L+ I+ P LK YL A FSL+ G KPH L F Sbjct: 37 GTVLILLAGRFRGKRVVYLKHLEDNTLLVTGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQTKEIKTERVEDQKVVDKALLAEIKKTPLLKQYLSASFSLKNGDKPHLLKF 176
BLAST of CF832495 vs. ExPASy Swiss-Prot
Match: RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3) HSP 1 Score: 116.316 bits (290), Expect = 1.274e-25 Identity = 71/143 (49.65%), Postives = 85/143 (59.44%), Query Frame = -3 Query: 185 GQCWIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 610 G IIL GR +GKRVVFLKQL SGLLLV+GP IN VPLRR +Q +VI TSTKVDIS V + K D YF K+ K DQK+VD ++ I+AVP L+ YL ++FSL GM PH+LVF Sbjct: 155 GTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKK-QLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDLQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 296
BLAST of CF832495 vs. ExPASy Swiss-Prot
Match: RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5) HSP 1 Score: 115.931 bits (289), Expect = 1.664e-25 Identity = 70/143 (48.95%), Postives = 86/143 (60.14%), Query Frame = -3 Query: 185 GQCWIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 610 G IIL GR +GKRVVFLKQL SGLLLV+GP +N VPLRR +Q +VI TSTKVDIS V + K D YF K+ K DQK+VD+ ++ I+AVP L+ YL ++FSL GM PH+LVF Sbjct: 157 GTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKK-PLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDSQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 298
BLAST of CF832495 vs. ExPASy Swiss-Prot
Match: RL6_SCHPO (60S ribosomal protein L6 OS=Schizosaccharomyces pombe GN=rpl6 PE=1 SV=2) HSP 1 Score: 114.775 bits (286), Expect = 3.706e-25 Identity = 66/143 (46.15%), Postives = 87/143 (60.84%), Query Frame = -3 Query: 185 GQCWIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTST-KVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 610 G I+LAGRF+GKRVV L QL L+V+GP+K+NGVP+RRVN YVI TS K+D+SGV+V+KF YFAK+ DQK+VDA L+ AI+A+P++K YL A F+L G +PH + F Sbjct: 55 GTVCILLAGRFRGKRVVVLSQLED-TLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEKFTKAYFAKQ-KRSGPVKKDEAFFAENAPKNALPAERIADQKAVDAKLLPAIKAIPNMKEYLAASFALSNGDRPHLMKF 195
BLAST of CF832495 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3) HSP 1 Score: 114.775 bits (286), Expect = 3.706e-25 Identity = 65/143 (45.45%), Postives = 86/143 (60.14%), Query Frame = -3 Query: 185 GQCWIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 610 G IIL GR +GKRV+FLKQL SGLLLV+GP +N VPLRR +Q +VI TSTK+DISGV + + D YF K+ DQK+VD+ +++ I+AVP L+ YL + F+L G+ PH+LVF Sbjct: 143 GTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEISEQRKV-DQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 284 The following BLAST results are available for this feature:
BLAST of CF832495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832495 ID=CF832495; Name=CF832495; organism=Citrus sinensis; type=EST; length=627bpback to top |