CF832496

Overview
NameCF832496
Unique NameCF832496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832496_ssr524 microsatellite CF832496_ssr524:524..535. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10117 contig Csv1_Contig10117:33..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832496 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.387e-79
Identity = 152/220 (69.09%), Postives = 165/220 (75.00%), Query Frame = 3
Query:   27 APKQGTLRVIRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKPTKLRASISPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFS 686
            A KQ    V RNPEL+RGIGK+SRSKMYHKRGLWAIKAKNGGVFP+H               FYPADDVKKPL+NKRKPKPTKLRASI+PGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFK+NGVPLRRVNQ+YVI TSTKVDISGVNV+KFDDKYF K+                            DDQK+VD  L+KAIE VP+LKAYLGARFS
Sbjct:    3 AAKQRKPHVSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFS 222          
BLAST of CF832496 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.447e-78
Identity = 152/221 (68.78%), Postives = 165/221 (74.66%), Query Frame = 3
Query:   24 MAPKQGTLRVIRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKPTKLRASISPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFS 686
            M  KQ T +V RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD              FYPA+DVKKPL N+R  KPTKLRASI+PGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K                             DDQK+VDA LIKAIEAVP+LK YLGARFS
Sbjct:    1 MPAKQRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFS 221          
BLAST of CF832496 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.447e-78
Identity = 149/221 (67.42%), Postives = 167/221 (75.57%), Query Frame = 3
Query:   24 MAPKQGTLRVIRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKPTKLRASISPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFS 686
            M   + T +V RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD              FYPA+DVKKPLVN+RKPKPTKL+ASI+PGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTSTK+DISGVN +KFDDKYF K                             +DQK+VDA LIK+IEAVP+LK YLGARFS
Sbjct:    1 MPAAKRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFS 221          
BLAST of CF832496 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 7.678e-78
Identity = 151/221 (68.33%), Postives = 164/221 (74.21%), Query Frame = 3
Query:   24 MAPKQGTLRVIRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKPTKLRASISPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFS 686
            M  KQ T +V RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD              FYPA+DVKKPL N+R  KP KLRASI+PGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K                             DDQK+VDA LIKAIEAVP+LK YLGARFS
Sbjct:    1 MPAKQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFS 221          
BLAST of CF832496 vs. ExPASy Swiss-Prot
Match: RL6B_YEAST (60S ribosomal protein L6-B OS=Saccharomyces cerevisiae GN=RPL6B PE=1 SV=4)

HSP 1 Score: 147.132 bits (370), Expect = 8.038e-35
Identity = 80/158 (50.63%), Postives = 99/158 (62.66%), Query Frame = 3
Query:  213 FYPADDVKKPLVNKRKPKPTKLRASISPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFS 686
            +YP++DV  P   ++  +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L    LLV+GPFK+NGVPLRRVN  YVI TSTKV + GVNV+KF+ +YFAKE                            +DQK VD  L+  I+  P LK YL A FS
Sbjct:    9 WYPSEDVAAPKKTRKAVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLVTGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQTKEIKTERVEDQKVVDKALLAEIKKTPLLKQYLSASFS 164          
BLAST of CF832496 vs. ExPASy Swiss-Prot
Match: RL6A_YEAST (60S ribosomal protein L6-A OS=Saccharomyces cerevisiae GN=RPL6A PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.055e-34
Identity = 80/158 (50.63%), Postives = 98/158 (62.03%), Query Frame = 3
Query:  213 FYPADDVKKPLVNKRKPKPTKLRASISPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFS 686
            +YP++DV      ++  +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L    LL+SGPFK+NGVPLRRVN  YVI TSTKV + GVNV+KF+ +YFAKE                            +DQK VD  LI  I+  P LK YL A FS
Sbjct:    9 WYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFS 164          
BLAST of CF832496 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 6.805e-34
Identity = 96/250 (38.40%), Postives = 129/250 (51.60%), Query Frame = 3
Query:   33 KQGTLRVIRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASISPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFS 686
            K+G     RNP L+RGIG++SRS MY ++ L+  K                           KNGG                    +YP +DV + L++  K KP      KLRASI+PGT+LIIL GR +GKRV+FLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTK+DISGV + +   D YF K+                             DQK+VD+ +++ I+AVP L+ YL + F+
Sbjct:   34 KKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEISEQRKV-DQKAVDSQILRRIKAVPQLQGYLRSVFA 272          
BLAST of CF832496 vs. ExPASy Swiss-Prot
Match: RL6_BOVIN (60S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=2 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 6.805e-34
Identity = 97/250 (38.80%), Postives = 129/250 (51.60%), Query Frame = 3
Query:   33 KQGTLRVIRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASISPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFS 686
            K+G     RNP L+RGIG++SRS MY ++ L+  K                           KNGG                    +YP +DV + L++  K KP      KLRASI+PGT+LIIL GR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTK+DISGV + +   D YF K+                             DQK+VD+ +++ I+AVP L+ YL + F+
Sbjct:   37 KKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKKLRKPRHQEGEIFDTEREKYEITEQRKV-DQKAVDSQILRRIKAVPQLQGYLRSVFA 275          
BLAST of CF832496 vs. ExPASy Swiss-Prot
Match: RL6_CHILA (60S ribosomal protein L6 OS=Chinchilla lanigera GN=RPL6 PE=2 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 1.161e-33
Identity = 99/256 (38.67%), Postives = 129/256 (50.39%), Query Frame = 3
Query:   15 VASMAPKQGTLRVIRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASISPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFS 686
            V +   K+G     RNP L+RGIG++SRS MY ++ L+  K                           KNGG                    +YP +DV + L++  K KP      KLRASI+PGTVLIIL GR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTK+DIS V + K   D YF K+                             DQK+VD+ ++  I+AVP L+ YL + F+
Sbjct:   32 VKAKKSKKGQPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYTAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTVLIILTGRHRGKRVVFLKQLASGLLLVTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKERYQISEQRKV-DQKAVDSQILPKIKAVPQLRGYLRSVFA 276          
BLAST of CF832496 vs. ExPASy Swiss-Prot
Match: RL6_HUMAN (60S ribosomal protein L6 OS=Homo sapiens GN=RPL6 PE=1 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.516e-33
Identity = 96/251 (38.25%), Postives = 128/251 (51.00%), Query Frame = 3
Query:   30 PKQGTLRVIRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASISPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFS 686
            PK+G     RNP L+RGIG++SRS MY ++ ++  K                           KNGG                    +YP +DV + L++  K KP      KLRASI+PGT+LIIL GR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTK+DIS V + K   D YF K+                             DQK+VD+ ++  I+A+P L+ YL + F+
Sbjct:   37 PKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKI-DQKAVDSQILPKIKAIPQLQGYLRSVFA 276          
The following BLAST results are available for this feature:
BLAST of CF832496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RL6_MESCR2.387e-7969.0960S ribosomal protein L6 OS=Mesembryanthemum cryst... [more]
RL63_ARATH3.447e-7868.7860S ribosomal protein L6-3 OS=Arabidopsis thaliana... [more]
RL61_ARATH3.447e-7867.4260S ribosomal protein L6-1 OS=Arabidopsis thaliana... [more]
RL62_ARATH7.678e-7868.3360S ribosomal protein L6-2 OS=Arabidopsis thaliana... [more]
RL6B_YEAST8.038e-3550.6360S ribosomal protein L6-B OS=Saccharomyces cerevi... [more]
RL6A_YEAST3.055e-3450.6360S ribosomal protein L6-A OS=Saccharomyces cerevi... [more]
RL6_PIG6.805e-3438.4060S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=... [more]
RL6_BOVIN6.805e-3438.8060S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=... [more]
RL6_CHILA1.161e-3338.6760S ribosomal protein L6 OS=Chinchilla lanigera GN... [more]
RL6_HUMAN1.516e-3338.2560S ribosomal protein L6 OS=Homo sapiens GN=RPL6 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01P06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832496 ID=CF832496; Name=CF832496; organism=Citrus sinensis; type=EST; length=688bp
GCCTTCAAAAGCGGGTAGCATCAATGGCGCCGAAGCAAGGGACCCTAAGA
GTGATCAGGAATCCGGAGCTGATCCGAGGAATTGGAAAGTTCTCTCGTTC
AAAGATGTACCATAAGAGGGGTCTCTGGGCAATTAAAGCCAAAAACGGTG
GCGTCTTTCCTCGTCACGACCCCAAGCCCAAAGCCGCTGCTCCCGCCGAG
AAGCCCCCCAAGTTTTACCCCGCCGATGACGTCAAGAAACCACTCGTCAA
CAAGCGCAAGCCTAAACCCACCAAACTTAGAGCAAGCATCTCCCCAGGGA
CAGTGCTGATTATACTAGCTGGAAGGTTCAAGGGTAAGAGAGTTGTGTTC
CTGAAGCAGCTTCCATCTGGGTTGCTTCTAGTTTCTGGGCCATTTAAGAT
CAATGGTGTTCCTTTACGACGTGTGAACCAGTCTTACGTGATTGGAACTT
CTACCAAAGTTGATATCTCCGGAGTGAATGTGGATAAGTTTGATGATAAG
TATTTTGCCAAGGAAGTCGAGAGGAAGAAGAAGAAAGGAGAGAATGAGTT
CTTTGAGTCAGAGAAAGAGGAGAAGAAGTCGCTTCCTCAGGAGAAGAAGG
ATGATCAGAAGTCTGTTGATGCACCATTGATCAAGGCCATTGAAGCTGTT
CCAGACTTGAAGGCTTACCTTGGTGCTAGGTTTTCCCT
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