CF832496
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832496 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1) HSP 1 Score: 295.049 bits (754), Expect = 2.387e-79 Identity = 152/220 (69.09%), Postives = 165/220 (75.00%), Query Frame = 3 Query: 27 APKQGTLRVIRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKPTKLRASISPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFS 686 A KQ V RNPEL+RGIGK+SRSKMYHKRGLWAIKAKNGGVFP+H FYPADDVKKPL+NKRKPKPTKLRASI+PGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFK+NGVPLRRVNQ+YVI TSTKVDISGVNV+KFDDKYF K+ DDQK+VD L+KAIE VP+LKAYLGARFS Sbjct: 3 AAKQRKPHVSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFS 222
BLAST of CF832496 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1) HSP 1 Score: 291.197 bits (744), Expect = 3.447e-78 Identity = 152/221 (68.78%), Postives = 165/221 (74.66%), Query Frame = 3 Query: 24 MAPKQGTLRVIRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKPTKLRASISPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFS 686 M KQ T +V RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD FYPA+DVKKPL N+R KPTKLRASI+PGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K DDQK+VDA LIKAIEAVP+LK YLGARFS Sbjct: 1 MPAKQRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFS 221
BLAST of CF832496 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1) HSP 1 Score: 291.197 bits (744), Expect = 3.447e-78 Identity = 149/221 (67.42%), Postives = 167/221 (75.57%), Query Frame = 3 Query: 24 MAPKQGTLRVIRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKPTKLRASISPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFS 686 M + T +V RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD FYPA+DVKKPLVN+RKPKPTKL+ASI+PGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTSTK+DISGVN +KFDDKYF K +DQK+VDA LIK+IEAVP+LK YLGARFS Sbjct: 1 MPAAKRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFS 221
BLAST of CF832496 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1) HSP 1 Score: 290.041 bits (741), Expect = 7.678e-78 Identity = 151/221 (68.33%), Postives = 164/221 (74.21%), Query Frame = 3 Query: 24 MAPKQGTLRVIRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKPTKLRASISPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFS 686 M KQ T +V RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD FYPA+DVKKPL N+R KP KLRASI+PGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K DDQK+VDA LIKAIEAVP+LK YLGARFS Sbjct: 1 MPAKQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFS 221
BLAST of CF832496 vs. ExPASy Swiss-Prot
Match: RL6B_YEAST (60S ribosomal protein L6-B OS=Saccharomyces cerevisiae GN=RPL6B PE=1 SV=4) HSP 1 Score: 147.132 bits (370), Expect = 8.038e-35 Identity = 80/158 (50.63%), Postives = 99/158 (62.66%), Query Frame = 3 Query: 213 FYPADDVKKPLVNKRKPKPTKLRASISPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFS 686 +YP++DV P ++ +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L LLV+GPFK+NGVPLRRVN YVI TSTKV + GVNV+KF+ +YFAKE +DQK VD L+ I+ P LK YL A FS Sbjct: 9 WYPSEDVAAPKKTRKAVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLVTGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQTKEIKTERVEDQKVVDKALLAEIKKTPLLKQYLSASFS 164
BLAST of CF832496 vs. ExPASy Swiss-Prot
Match: RL6A_YEAST (60S ribosomal protein L6-A OS=Saccharomyces cerevisiae GN=RPL6A PE=1 SV=2) HSP 1 Score: 145.206 bits (365), Expect = 3.055e-34 Identity = 80/158 (50.63%), Postives = 98/158 (62.03%), Query Frame = 3 Query: 213 FYPADDVKKPLVNKRKPKPTKLRASISPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFS 686 +YP++DV ++ +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L LL+SGPFK+NGVPLRRVN YVI TSTKV + GVNV+KF+ +YFAKE +DQK VD LI I+ P LK YL A FS Sbjct: 9 WYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFS 164
BLAST of CF832496 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3) HSP 1 Score: 144.05 bits (362), Expect = 6.805e-34 Identity = 96/250 (38.40%), Postives = 129/250 (51.60%), Query Frame = 3 Query: 33 KQGTLRVIRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASISPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFS 686 K+G RNP L+RGIG++SRS MY ++ L+ K KNGG +YP +DV + L++ K KP KLRASI+PGT+LIIL GR +GKRV+FLKQL SGLLLV+GP +N VPLRR +Q +VI TSTK+DISGV + + D YF K+ DQK+VD+ +++ I+AVP L+ YL + F+ Sbjct: 34 KKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEISEQRKV-DQKAVDSQILRRIKAVPQLQGYLRSVFA 272
BLAST of CF832496 vs. ExPASy Swiss-Prot
Match: RL6_BOVIN (60S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=2 SV=3) HSP 1 Score: 144.05 bits (362), Expect = 6.805e-34 Identity = 97/250 (38.80%), Postives = 129/250 (51.60%), Query Frame = 3 Query: 33 KQGTLRVIRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASISPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFS 686 K+G RNP L+RGIG++SRS MY ++ L+ K KNGG +YP +DV + L++ K KP KLRASI+PGT+LIIL GR +GKRVVFLKQL SGLLLV+GP +N VPLRR +Q +VI TSTK+DISGV + + D YF K+ DQK+VD+ +++ I+AVP L+ YL + F+ Sbjct: 37 KKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKKLRKPRHQEGEIFDTEREKYEITEQRKV-DQKAVDSQILRRIKAVPQLQGYLRSVFA 275
BLAST of CF832496 vs. ExPASy Swiss-Prot
Match: RL6_CHILA (60S ribosomal protein L6 OS=Chinchilla lanigera GN=RPL6 PE=2 SV=3) HSP 1 Score: 143.28 bits (360), Expect = 1.161e-33 Identity = 99/256 (38.67%), Postives = 129/256 (50.39%), Query Frame = 3 Query: 15 VASMAPKQGTLRVIRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASISPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFS 686 V + K+G RNP L+RGIG++SRS MY ++ L+ K KNGG +YP +DV + L++ K KP KLRASI+PGTVLIIL GR +GKRVVFLKQL SGLLLV+GP +N VPLRR +Q +VI TSTK+DIS V + K D YF K+ DQK+VD+ ++ I+AVP L+ YL + F+ Sbjct: 32 VKAKKSKKGQPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYTAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTVLIILTGRHRGKRVVFLKQLASGLLLVTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKERYQISEQRKV-DQKAVDSQILPKIKAVPQLRGYLRSVFA 276
BLAST of CF832496 vs. ExPASy Swiss-Prot
Match: RL6_HUMAN (60S ribosomal protein L6 OS=Homo sapiens GN=RPL6 PE=1 SV=3) HSP 1 Score: 142.895 bits (359), Expect = 1.516e-33 Identity = 96/251 (38.25%), Postives = 128/251 (51.00%), Query Frame = 3 Query: 30 PKQGTLRVIRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASISPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFS 686 PK+G RNP L+RGIG++SRS MY ++ ++ K KNGG +YP +DV + L++ K KP KLRASI+PGT+LIIL GR +GKRVVFLKQL SGLLLV+GP +N VPLRR +Q +VI TSTK+DIS V + K D YF K+ DQK+VD+ ++ I+A+P L+ YL + F+ Sbjct: 37 PKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKI-DQKAVDSQILPKIKAIPQLQGYLRSVFA 276 The following BLAST results are available for this feature:
BLAST of CF832496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832496 ID=CF832496; Name=CF832496; organism=Citrus sinensis; type=EST; length=688bpback to top |