CF832516

Overview
NameCF832516
Unique NameCF832516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832516 vs. ExPASy Swiss-Prot
Match: NUDT9_ARATH (Nudix hydrolase 9 OS=Arabidopsis thaliana GN=NUDT9 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.471e-48
Identity = 92/136 (67.65%), Postives = 110/136 (80.88%), Query Frame = 3
Query:  237 SAYKLLLSCPHGFSSSQVSVVFDGSYDRVPHPDTNLENSISEIWDSRVQSNKSLFNGQKFRYGGHIMRGEGGSSVE-SHVCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDDVIQCQHTASPLGNGAVVETSDKKIL 641
            S Y+LLLSCP G S SQVSV F  S+DR+P  D  LE+SIS++W+ R Q N SLFNGQKFRYGG+ +  + GS+ E  HVCL LGLTDYRTFVGTNL+ LWEKFLV SEDD ++C+HT+SPLGNGAV+ETSDKKI+
Sbjct:   13 SRYQLLLSCPSGLSPSQVSVDFSKSHDRIPRQDPGLEDSISQVWEQRSQGNSSLFNGQKFRYGGYCLDDDDGSTNEVPHVCLRLGLTDYRTFVGTNLSSLWEKFLVTSEDDSVRCRHTSSPLGNGAVIETSDKKII 148          
BLAST of CF832516 vs. ExPASy Swiss-Prot
Match: NUD22_RAT (Nucleoside diphosphate-linked moiety X motif 22 OS=Rattus norvegicus GN=Nudt22 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.457e-12
Identity = 49/134 (36.57%), Postives = 69/134 (51.49%), Query Frame = 3
Query:  234 DSAYKLLLSCPHG-FSSSQVSVVFDGSYDRVPHPDTNLENSISEIWDSRVQSNKSLFNGQKFRYGGHIMRGEGGSSVESHVCLHLGLTDYRTFVGTNLNPLWEKFLVPSEDDVIQCQ-HTASPLGNGAVVETSD 629
            D    L+L CP G  S  QVSV    ++DR P P+   + +I+ IW++R+Q+   +F+  KFR     +     SS E  + LHLGLT YR F+GTN +            D    Q + A PLG GA + T+D
Sbjct:    2 DPEVSLMLLCPPGGLSQEQVSVELSPAHDRRPLPEG--DKTITAIWETRLQAQPWIFDAPKFRLHSATL---ASSSPEPQLLLHLGLTSYRDFLGTNWSSSASWLRQQGATDWGDKQAYLADPLGVGAALVTAD 130          
The following BLAST results are available for this feature:
BLAST of CF832516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NUDT9_ARATH1.471e-4867.65Nudix hydrolase 9 OS=Arabidopsis thaliana GN=NUDT9... [more]
NUD22_RAT6.457e-1236.57Nucleoside diphosphate-linked moiety X motif 22 OS... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01P16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01P16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832516 ID=CF832516; Name=CF832516; organism=Citrus sinensis; type=EST; length=643bp
CTTTTCGAACCTGTTGAGTTGATTTAATGATGTATATATTTGACTAATTA
TCTTGCATAAGAAAAGAGTAATTTGGTTGTGACTCTATATATTCCTTGCA
AATACTGTTAATATGAGAGCATCTGCAAATGAAGAGAGTTTGGAGAAAGA
GAAAAAGGGCACCTACTAAAGTTTAAAGAGTAATTTAATCGAACAGGTGG
CGTGCATTTGGGATTCCAATGGAGCAGGAAGCAGACTCAGCTTACAAGCT
TCTTCTTTCGTGCCCACATGGTTTTTCATCATCTCAGGTCTCTGTGGTTT
TTGATGGATCATATGATAGGGTTCCTCATCCTGACACTAACTTAGAGAAC
TCCATTTCTGAGATATGGGATTCAAGGGTTCAGAGCAACAAGTCCTTGTT
TAATGGTCAAAAGTTCAGGTATGGAGGGCATATAATGCGAGGTGAAGGTG
GATCCAGCGTAGAATCTCATGTGTGCCTCCATCTTGGATTGACAGATTAT
AGGACTTTTGTGGGTACAAACTTGAATCCTTTGTGGGAGAAGTTTCTGGT
TCCATCAGAAGATGATGTGATCCAATGTCAGCACACTGCAAGTCCCTTGG
GTAATGGTGCAGTGGTAGAGACATCTGACAAGAAAATACTCTT
back to top