CF832590

Overview
NameCF832590
Unique NameCF832590
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length429
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4200 contig Csv1_Contig4200:538..966. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832590 vs. ExPASy Swiss-Prot
Match: R10A3_ARATH (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.416e-30
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = -2
Query:  234 ATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 428
            ATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGP NR+F
Sbjct:  153 ATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPNRVF 217          
BLAST of CF832590 vs. ExPASy Swiss-Prot
Match: R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.678e-29
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = -2
Query:  234 ATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 428
            ATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGP  RIF
Sbjct:  152 ATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216          
BLAST of CF832590 vs. ExPASy Swiss-Prot
Match: R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.862e-29
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = -2
Query:  234 ATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 428
            ATVKFQLKKVLCMGVAVGNLSMEEKQ+FQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGP  RIF
Sbjct:  152 ATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216          
BLAST of CF832590 vs. ExPASy Swiss-Prot
Match: RL10A_CHLRE (60S ribosomal protein L10a OS=Chlamydomonas reinhardtii GN=RPL10A PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.205e-19
Identity = 44/64 (68.75%), Postives = 53/64 (82.81%), Query Frame = -2
Query:  234 TVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 425
            ++KFQLKKVLCMGVAV N+ M E +I  N+  ++NFLVSLLKKNWQNVRCLY+KSTMG   RI+
Sbjct:  150 SIKFQLKKVLCMGVAVANVGMTEGEIRTNIMYAINFLVSLLKKNWQNVRCLYIKSTMGKPIRIY 213          
BLAST of CF832590 vs. ExPASy Swiss-Prot
Match: RL10A_TRYBR (60S ribosomal protein L10a OS=Trypanosoma brucei rhodesiense GN=RPL10A PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.685e-19
Identity = 43/65 (66.15%), Postives = 54/65 (83.08%), Query Frame = -2
Query:  234 ATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 428
            +TVKFQLKKVLC+G  VG++ M E Q+ QNV M++NFLVSLLKKNWQN++  Y+KSTMG S RI+
Sbjct:  150 STVKFQLKKVLCLGTCVGHVDMTEDQVRQNVVMAINFLVSLLKKNWQNLKSAYIKSTMGKSQRIY 214          
BLAST of CF832590 vs. ExPASy Swiss-Prot
Match: RL10A_DANRE (60S ribosomal protein L10a OS=Danio rerio GN=rpl10a PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.580e-19
Identity = 40/65 (61.54%), Postives = 55/65 (84.62%), Query Frame = -2
Query:  234 ATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 428
            +T+KFQ+KKVLC+ VAVG++ M E+++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:  152 STIKFQMKKVLCLAVAVGHVKMSEEELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 216          
BLAST of CF832590 vs. ExPASy Swiss-Prot
Match: R10AB_DROME (60S ribosomal protein L10a-2 OS=Drosophila melanogaster GN=RpL10Ab PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 5.982e-19
Identity = 40/65 (61.54%), Postives = 56/65 (86.15%), Query Frame = -2
Query:  234 ATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 428
            +T+KFQ+KKVLC+ VAVG++ M+  ++ QNV +S+NFLVSLLKKNWQNVR L++KS+MGP  R++
Sbjct:  153 STIKFQMKKVLCLSVAVGHVGMKSDELAQNVNLSINFLVSLLKKNWQNVRSLHVKSSMGPPQRLY 217          
BLAST of CF832590 vs. ExPASy Swiss-Prot
Match: RL10A_XENLA (60S ribosomal protein L10a OS=Xenopus laevis GN=rpl10a PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.813e-19
Identity = 39/65 (60.00%), Postives = 55/65 (84.62%), Query Frame = -2
Query:  234 ATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 428
            +T+KFQ+KKVLC+ VAVG++ + E+++  N+ +S+NFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:  153 STIKFQMKKVLCLAVAVGHVKLTEEELVYNIHLSINFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CF832590 vs. ExPASy Swiss-Prot
Match: RL10A_CANAL (60S ribosomal protein L10a OS=Candida albicans GN=RPL10A PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.333e-18
Identity = 43/65 (66.15%), Postives = 52/65 (80.00%), Query Frame = -2
Query:  234 ATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 428
            +T+KFQLKKVLC+ VAVGN+ MEE  +   + M+ NFLVSLLKKNWQNV  L +KSTMGPS RI+
Sbjct:  153 STIKFQLKKVLCLAVAVGNVDMEEDVLVNQIMMAANFLVSLLKKNWQNVGSLVIKSTMGPSFRIY 217          
BLAST of CF832590 vs. ExPASy Swiss-Prot
Match: RL10A_SPOFR (60S ribosomal protein L10a OS=Spodoptera frugiperda GN=RpL10A PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.273e-18
Identity = 40/65 (61.54%), Postives = 55/65 (84.62%), Query Frame = -2
Query:  234 ATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 428
            AT+KFQ+KKVLC+ VAVG++ M   ++ QNV +S+NFLVSLLKK+WQNVR L++KSTMGP  +++
Sbjct:  153 ATIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPPKLY 217          
The following BLAST results are available for this feature:
BLAST of CF832590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
R10A3_ARATH4.416e-3096.9260S ribosomal protein L10a-3 OS=Arabidopsis thalia... [more]
R10A1_ARATH1.678e-2996.9260S ribosomal protein L10a-1 OS=Arabidopsis thalia... [more]
R10A2_ARATH2.862e-2995.3860S ribosomal protein L10a-2 OS=Arabidopsis thalia... [more]
RL10A_CHLRE1.205e-1968.7560S ribosomal protein L10a OS=Chlamydomonas reinha... [more]
RL10A_TRYBR2.685e-1966.1560S ribosomal protein L10a OS=Trypanosoma brucei r... [more]
RL10A_DANRE4.580e-1961.5460S ribosomal protein L10a OS=Danio rerio GN=rpl10... [more]
R10AB_DROME5.982e-1961.5460S ribosomal protein L10a-2 OS=Drosophila melanog... [more]
RL10A_XENLA7.813e-1960.0060S ribosomal protein L10a OS=Xenopus laevis GN=rp... [more]
RL10A_CANAL1.333e-1866.1560S ribosomal protein L10a OS=Candida albicans GN=... [more]
RL10A_SPOFR2.273e-1861.5460S ribosomal protein L10a OS=Spodoptera frugiperd... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02B16_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832590 ID=CF832590; Name=CF832590; organism=Citrus sinensis; type=EST; length=429bp
TTTTTTTTTTTTTTTAACAGAAAGCAATCATGATTCAATTCAACATCTCT
CCAACAAAAAAATTCGTACAAGTCTACCATATTATAAGATTACTAGTGCA
TTAAATTCAGAAAAGAAAAAGAAAAAGAAAAAGAAAATTGCAGGTTGTGA
CCATTCAAAGAAAGACATTTTGGGTATAATAAGATCACACTAGGTTTTCC
CTACAAAACTCCAACATAAAGCAGAATTTCTTAAAAGATGCGGTTTGAAG
GACCCATGGTACTCTTCAGATAGAGGCACCTGACATTCTGCCAGTTTTTC
TTCAACAATGAGACAAGGAAGTTAACACTCATTTGAACATTCTGGAAGAT
CTGCTTCTCCTCCATTGAAAGGTTTCCAACAGCAACTCCCATGCAAAGCA
CCTTCTTCAATTGGAACTTCACTGTTGCC
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