CF832657

Overview
NameCF832657
Unique NameCF832657
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832657_ssr311 microsatellite CF832657_ssr311:311..322. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2997 contig Csv1_Contig2997:341..1148. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF832657 vs. ExPASy Swiss-Prot
Match: SSRA_ARATH (Translocon-associated protein subunit alpha OS=Arabidopsis thaliana GN=At2g21160 PE=2 SV=3)

HSP 1 Score: 217.624 bits (553), Expect = 6.431e-56
Identity = 104/152 (68.42%), Postives = 128/152 (84.21%), Query Frame = -1 
Query:  353 NDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEWLQGT 808
            N+G++ V V+ I+ASVHLP+DH LLVQNLT    NNA++P S QATFPYIFAVS++LQPG FDLVG I+Y+V+  PYQS FYNGTIEVVESGG +S ESVFL+TLGI LL+L GLW + QV++L+KKTKK  KVEVGT +T+AS+DEWL+GT
Sbjct:   92 NEGKTRVGVMGIRASVHLPYDHKLLVQNLTMLRLNNASIPTSLQATFPYIFAVSQYLQPGAFDLVGYIIYDVEGKPYQSVFYNGTIEVVESGGLLSGESVFLLTLGIGLLLLLGLWAYSQVQRLTKKTKKVSKVEVGTRSTEASLDEWLEGT 243
[Close]
BLAST of CF832657 vs. ExPASy Swiss-Prot
Match: SSRA_DICDI (Translocon-associated protein subunit alpha OS=Dictyostelium discoideum GN=ssr1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.733e-14
Identity = 51/159 (32.08%), Postives = 82/159 (51.57%), Query Frame = -1 
Query:  350 NDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHG------QVKQLSKKTKKAPKVEVGTGTTDASMDEWLQGTA 808
            N+ + ++N+  I AS++ P D S+ +QN T   F  A V     AT  Y F  S++L+P  F L+ S+ Y+     +  TF+N TI + E      ++S FL+ LG+  +   G  ++G      +V+ +SK  K A +VE     T+    EWL GT+
Sbjct:   67 NNADKALNITHIFASLNHPQDFSVFIQNYTRGDFGIA-VEKGHHATLAYRFVPSEYLEPREFGLLISLEYQDGAQNFTQTFFNSTINITEKETSFDMDSFFLILLGLGFVGGIGYIVYGKMPKQKKVRTVSKVNKNAVRVE-----TEDETAEWLSGTS 219
The following BLAST results are available for this feature:
BLAST of CF832657 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SSRA_ARATH6.431e-5668.42Translocon-associated protein subunit alpha OS=Ara... [more]
SSRA_DICDI2.733e-1432.08Translocon-associated protein subunit alpha OS=Dic... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02D14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832657 ID=CF832657; Name=CF832657; organism=Citrus sinensis; type=EST; length=808bp
TTTTTTTTTTTTTTTTTAATCTAAAAAGGATTCTTCAGATCCATAAAAAA
ATTCTGTTCTTCCTACTCAAAATCAGAGTTAGTTTCCCTTCAAAATGGCT
CAACCTTTTTAGAATCTCCGAGAAAATATAAATATCTATGATTTCTTTCC
AAATGCTACAACAGCAAGGCAGGTCTTTTCTGGCCTACTTCCCAAAACTA
CTTCCACTCGTATGCTCTCTAAAATTTCCAAATGCCTAGCGTGAGTTACA
AGAGTTCGCACTTCACCAGAATGCCTGATGCAGCTGTACTGGGCAATAGT
TGCTCATCTACTTCTTCTTCTTTGATTTGCTGGACAATGACTGAGTATAT
GCAGTTCCCTGAAGCCATTCGTCCATTGAGGCATCTGTAGTTCCTGTACC
AACTTCCACCTTTGGAGCCTTCTTAGTTTTCTTGGACAATTGTTTGACTT
GACCATGAATCCATAAACCAAAAAGGACAAGAAGCGCGATTCCAAGGGTA
ACAAGAAAAACGGACTCAATGCTGATGAACCCACCAGATTCAACAACTTC
AATGGTACCATTGTAGAAGGTGCTTTGGTAAGGATGCTGGTCTACCTCAT
AAACAATGGAGCCCACAAGATCAAAAGTTCCAGGCTGCAAGAACTTGCTG
ACAGCAAAAATGTATGGGAAAGTAGCCTGAGCTGATACCGGCACAGTTGC
ATTGTTAAAGGCCTGTCCAGTGAGATTTTGAACCAGAAGACTGTGATCAA
AAGGGAGATGAACACTGGCCTGAATTGCAATCACATTCACGCTTGACTCC
CCATCATT
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