CF832681

Overview
NameCF832681
Unique NameCF832681
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832681 vs. ExPASy Swiss-Prot
Match: ZFP4_ARATH (Zinc finger protein 4 OS=Arabidopsis thaliana GN=ZFP4 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.265e-16
Identity = 61/160 (38.12%), Postives = 79/160 (49.38%), Query Frame = -1
Query:  432 LGGNSLSTSRDPDSPARPTTAK-VFSCNFCMRKFFSSQALGGHQNAHKRERGAAKRYQSQRM-------------------MTMMGLPVH----TNMV--RSLGVRAHSLVHKPSRDGAGVG------ARFNDADTGFGMAWTPYVLEEATDVMWPGSFR 815
            L   S S++ +     +P+ +K VFSCN+C RKF+SSQALGGHQNAHKRER  AKR     +                     +  LP+H     NM   R+LG+RAHS  H  S             ARFN     FG     YV ++  +++WPGSFR
Sbjct:   61 LSSTSESSNPEQQQQQQPSVSKRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRAMRMGLAGVFPGRGSSSNYAAAATAAALSCLPLHGSGNGNMTSFRTLGIRAHSSAHDVSMTRQTPETLIRNIARFNQG--YFGNCIPFYVEDDEAEMLWPGSFR 218          
BLAST of CF832681 vs. ExPASy Swiss-Prot
Match: ZFP1_ARATH (Zinc finger protein 1 OS=Arabidopsis thaliana GN=ZFP1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.607e-16
Identity = 48/108 (44.44%), Postives = 60/108 (55.56%), Query Frame = -1
Query:  549 NSLSTSRDPDSPARPTTAKVFSCNFCMRKFFSSQALGGHQNAHKRERGAAKRYQSQRM--------------------MTMMGLPVH--TNMVRSLGVRAHSLVHKPS 806
            +S STS       +    +VFSCN+C RKF+SSQALGGHQNAHKRER  AKR Q  +M                     +M  LP+H   N   +LG++AHS +HKPS
Sbjct:   48 SSSSTSHHQHQQEQLADPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQYYKMTLSSLPSSAFAFGHGSVSRFASMASLPLHGSVNNRSTLGIQAHSTIHKPS 155          
BLAST of CF832681 vs. ExPASy Swiss-Prot
Match: ZFP7_ARATH (Zinc finger protein 7 OS=Arabidopsis thaliana GN=ZFP7 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.120e-14
Identity = 51/122 (41.80%), Postives = 64/122 (52.46%), Query Frame = -1
Query:  432 DPDSPARPTTAKVFSCNFCMRKFFSSQALGGHQNAHKRERGAAKRYQSQRMMTMMGLPVHTNMVRSLGVRAHS-LVHKPSRDGAGVGARFNDADTGFGMAWTPYVL---EEATDVMWPGSFR 785
            D  S       +VFSCN+C RKF+SSQALGGHQNAHKRER  AKR      M       +T    SLG++AHS L+H        + +RF+    G+     P      +  +D  WPGSFR
Sbjct:   46 DTKSTKCEANPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMHMGRMFGHHHRPYTYTSSSLGMQAHSGLLHHTLSQPQPLVSRFH--HQGYFGNTVPLFFDYDDGGSDFFWPGSFR 165          
BLAST of CF832681 vs. ExPASy Swiss-Prot
Match: ZFP3_ARATH (Zinc finger protein 3 OS=Arabidopsis thaliana GN=ZFP3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.052e-13
Identity = 45/83 (54.22%), Postives = 51/83 (61.45%), Query Frame = -1
Query:  549 TTAKVFSCNFCMRKFFSSQALGGHQNAHKRERGAAKRYQSQRMMTMMG----------LPVH--TNMVRSLGVRAHSLVHKPS 761
            T  K+FSCN+C R F+SSQALGGHQNAHKRER  AKR   QRM               LP H   N  RSLG++AHS+ HK S
Sbjct:   56 TEQKLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKR--GQRMAASASAFGHPYGFSPLPFHGQYNNHRSLGIQAHSISHKLS 136          
The following BLAST results are available for this feature:
BLAST of CF832681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ZFP4_ARATH2.265e-1638.13Zinc finger protein 4 OS=Arabidopsis thaliana GN=Z... [more]
ZFP1_ARATH8.607e-1644.44Zinc finger protein 1 OS=Arabidopsis thaliana GN=Z... [more]
ZFP7_ARATH2.120e-1441.80Zinc finger protein 7 OS=Arabidopsis thaliana GN=Z... [more]
ZFP3_ARATH1.052e-1354.22Zinc finger protein 3 OS=Arabidopsis thaliana GN=Z... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02E04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832681 ID=CF832681; Name=CF832681; organism=Citrus sinensis; type=EST; length=815bp
TTTTTTTTTTTTTTTTGATGAAGGAAATTGAACAAAGTATTTCATACCCA
GGGTAAGAGAATCCCTTATAGACTCTGTTAAATGTAAGTATAGGCACCAG
GAACAGTAATAGGCATCGAAATACAAGATTATTGAAATTGACGGTATCTC
TTAGTGGCTTTTTTAGCTACAACACGCATAATGATAGGAAACATAAGAAC
TCGGAGTTTTTTTTTCTAGTTGTTAGGCAGAACCACCATCCTTGTTGAAA
TTATGGGCTCCTACCCTTGTTAGTTTTTGTACTTGATGTATTAATAAATT
AAGAACTGACCCAATAGAAAAGACCGTAAAAAGAAAATTTCAAACTCAGT
AAGAGGACTGATGGATCAGAGTCGGAGATTTAAGTCAAGCTTGAGAGGCT
CCGGGGGTGGCTCTGGAAGTTGTAGATTCAAGCGAAAGCTGCCTGGCCAC
ATCACATCTGTTGCTTCCTCTAGCACGTAAGGTGTCCATGCCATTCCAAA
CCCTGTGTCGGCATCATTAAACCTTGCTCCAACACCAGCTCCGTCTCTGC
TTGGCTTGTGCACAAGTGAATGGGCCCTGACACCTAGTGATCGAACCATA
TTAGTGTGGACGGGCAAGCCCATCATTGTCATCATTCTCTGGGATTGGTA
TCTTTTAGCTGCACCTCTCTCCCTCTTGTGGGCGTTCTGATGGCCTCCGA
GTGCCTGTGAACTGAAAAACTTCCTCATGCAGAAGTTGCATGAGAAAACC
TTAGCGGTAGTCGGCCTTGCTGGTGAGTCAGGATCTCTGCTTGTCGAGAG
TGAATTCCCTCCTAG
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