CF832723

Overview
NameCF832723
Unique NameCF832723
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2001 contig Csv1_Contig2001:227..962. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832723 vs. ExPASy Swiss-Prot
Match: ZFP4_ARATH (Zinc finger protein 4 OS=Arabidopsis thaliana GN=ZFP4 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.271e-12
Identity = 52/133 (39.10%), Postives = 64/133 (48.12%), Query Frame = -3
Query:  429 NFCMRKFFSSQALGGHQNAHKRERGAAKRYQSQRM-------------------MTMMGLPVH----TNMV--RSLGVRAHSLVHKPSRAGAGVG------ARFNDADTGFGMAWTPYVLEEATDVMWPGSFR 734
            N+C RKF+SSQALGGHQNAHKRER  AKR     +                     +  LP+H     NM   R+LG+RAHS  H  S             ARFN     FG     YV ++  +++WPGSFR
Sbjct:   88 NYCQRKFYSSQALGGHQNAHKRERTLAKRAMRMGLAGVFPGRGSSSNYAAAATAAALSCLPLHGSGNGNMTSFRTLGIRAHSSAHDVSMTRQTPETLIRNIARFNQG--YFGNCIPFYVEDDEAEMLWPGSFR 218          
BLAST of CF832723 vs. ExPASy Swiss-Prot
Match: ZFP1_ARATH (Zinc finger protein 1 OS=Arabidopsis thaliana GN=ZFP1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.169e-12
Identity = 41/88 (46.59%), Postives = 50/88 (56.82%), Query Frame = -3
Query:  537 NFCMRKFFSSQALGGHQNAHKRERGAAKRYQSQRM--------------------MTMMGLPVH--TNMVRSLGVRAHSLVHKPSRAG 734
            N+C RKF+SSQALGGHQNAHKRER  AKR Q  +M                     +M  LP+H   N   +LG++AHS +HKPS  G
Sbjct:   71 NYCQRKFYSSQALGGHQNAHKRERTLAKRGQYYKMTLSSLPSSAFAFGHGSVSRFASMASLPLHGSVNNRSTLGIQAHSTIHKPSFLG 158          
BLAST of CF832723 vs. ExPASy Swiss-Prot
Match: ZFP7_ARATH (Zinc finger protein 7 OS=Arabidopsis thaliana GN=ZFP7 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11
Identity = 45/106 (42.45%), Postives = 57/106 (53.77%), Query Frame = -3
Query:  429 NFCMRKFFSSQALGGHQNAHKRERGAAKRYQSQRMMTMMGLPVHTNMVRSLGVRAHS-LVHKPSRAGAGVGARFNDADTGFGMAWTPYVL---EEATDVMWPGSFR 734
            N+C RKF+SSQALGGHQNAHKRER  AKR      M       +T    SLG++AHS L+H        + +RF+    G+     P      +  +D  WPGSFR
Sbjct:   62 NYCRRKFYSSQALGGHQNAHKRERTMAKRAMHMGRMFGHHHRPYTYTSSSLGMQAHSGLLHHTLSQPQPLVSRFH--HQGYFGNTVPLFFDYDDGGSDFFWPGSFR 165          
The following BLAST results are available for this feature:
BLAST of CF832723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ZFP4_ARATH1.271e-1239.10Zinc finger protein 4 OS=Arabidopsis thaliana GN=Z... [more]
ZFP1_ARATH2.169e-1246.59Zinc finger protein 1 OS=Arabidopsis thaliana GN=Z... [more]
ZFP7_ARATH2.398e-1142.45Zinc finger protein 7 OS=Arabidopsis thaliana GN=Z... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02F03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832723 ID=CF832723; Name=CF832723; organism=Citrus sinensis; type=EST; length=736bp
TTTTTTTTTTTTTGATGAAGGAAATTGAACAAAGTATTTCATACTCCGGG
TAAGAGAATCCCTTATAGACTCTGTTAAATGTAAGTATAGGCACCAGGAA
CAGTAATAGGCATCGAAATACAAGATTATTGAAATTGACGGTATCTCTTA
GTGGCTTTTTTAGCTACAACACGCATAATGATAGGAAACATAGGAACTCG
GAGGTTTTTTTTCTAATTGTTAGGCAAAACCACCATCCTTGGTGAAATTA
TGGGCTCCTACCCTTGTTAGTTTTTGTACTTGATGGATTAATAAATTAAG
AACTGACCCAATAGAAAAGACCGTAAAAAGAAAATTTCAAACTCAGTAAG
AGGACTGATGGATCACAGTCGGATATTTAAGTCAAGCTTGAAAGGCTCCG
GGGGTGGCTCTGGAAGTTGTAAATTCAAGCGAAAGCTGCCTGGCCACATC
ACATCTGTTGCTTCCTCTAGCACGTAAGGTGTCCATGCCATTCCAAACCC
TGTGTCGGCATCATTAAACCTTGCTCCAACACCAGCTCCGGCTCTGCTTG
GCTTGTGCACAAGAGAATGGGCCCTGACACCTAGTGATCGAACCATATTA
GTGTGGACGGGCAAGCCCATCATTGTCATCATTCTCTGGGATTGGTATCT
TTTAGCTGCACCTCTCTCCCTCTTGTGGGCGTTCTGATGGCCTCCGAGTG
CCTGTGAACTGAAAAACTTCCTCATGCAGAAGTTGC
back to top