CF832748

Overview
NameCF832748
Unique NameCF832748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1113 contig Csv1_Contig1113:320..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 4.232e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   71 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 147
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B3_SOLLC (Histone H2B.3 (Fragment) OS=Solanum lycopersicum GN=H2B-3 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 4.232e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   61 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 137
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B3_ARATH (Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720 PE=1 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 9.428e-36
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPDIGISSKAMGIMNSFINDIFEKLAQEAS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   75 VHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 9.428e-36
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   72 VHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 149.058 bits (375), Expect = 9.428e-36
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPDIGISSKAMGIMNSFINDIFEKLAQEAS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   74 VHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B3_MEDTR (Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 1.231e-35
Identity = 75/77 (97.40%), Postives = 77/77 (100.00%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPDIG+SSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   62 VHPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 138
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B_CAPAN (Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 2.100e-35
Identity = 75/77 (97.40%), Postives = 77/77 (100.00%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPDIGISSK+MGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   69 VHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B1_ARATH (Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790 PE=1 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 2.100e-35
Identity = 75/77 (97.40%), Postives = 77/77 (100.00%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   72 VHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B9_ARATH (Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570 PE=1 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 2.743e-35
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPDIGIS KAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   56 VHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 132
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B8_ARATH (Histone H2B.8 OS=Arabidopsis thaliana GN=At3g53650 PE=1 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 6.111e-35
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPDIGIS KAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGEL+KHAVSEGTKAVTKFTSS
Sbjct:   62 VHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELSKHAVSEGTKAVTKFTSS 138
The following BLAST results are available for this feature:
BLAST of CF832748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2B_GOSHI4.232e-36100.00Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV... [more]
H2B3_SOLLC4.232e-36100.00Histone H2B.3 (Fragment) OS=Solanum lycopersicum G... [more]
H2B3_ARATH9.428e-3698.70Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720... [more]
H2B1_MEDTR9.428e-3698.70Probable histone H2B.1 OS=Medicago truncatula PE=3... [more]
H2B11_ARATH9.428e-3698.70Histone H2B.11 OS=Arabidopsis thaliana GN=At5g5991... [more]
H2B3_MEDTR1.231e-3597.40Probable histone H2B.3 OS=Medicago truncatula PE=3... [more]
H2B_CAPAN2.100e-3597.40Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3[more]
H2B1_ARATH2.100e-3597.40Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790... [more]
H2B9_ARATH2.743e-3597.40Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570... [more]
H2B8_ARATH6.111e-3596.10Histone H2B.8 OS=Arabidopsis thaliana GN=At3g53650... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832748 ID=CF832748; Name=CF832748; organism=Citrus sinensis; type=EST; length=473bp
TTTTTTTTTTTTTTTTTCGAAATCATATTTCATTTTCATATTCTACCATA
ATGAACATGCACATCACCTGGATCAGGTCCAAATTTCTAGTACATCCAAA
CAAACCCTAAAAATCCACCAAAGATTTGAAAACACAAAACATAAAAACGA
CTTCATCTAGTAAAATTAAAGGCCTAAACTACTAACTACACAAATCACAT
AACACCCGAATTCACCGACCGATGCAACAAACTTCCTTCAAGAAGAAGTA
AACTTAGTAACAGCTTTGGTACCCTCAGAAACAGCGTGCTTAGCCAGCTC
ACCAGGAAGTACAAGTCTCACAGCGGTCTGAATTTCCCGAGATGTAATCG
TCGGCTTCTTATTGTACCTTGCAAGCCTAGAAGCTTCCTGGGCAAGCTTC
TCGAAAATATCGTTGATGAAACTGTTCATGATTCCCATGGCCTTGCTCGA
GATTCCGATATCGGGATGTACCT
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