CF832875

Overview
NameCF832875
Unique NameCF832875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4072 contig Csv1_Contig4072:346..1100. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832875 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 9.109e-78
Identity = 146/171 (85.38%), Postives = 156/171 (91.23%), Query Frame = -2
Query:  242 MLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSPVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIISGGSVNGANCKELAAQPDVDGFLVGGAFLKPEFIDIIKFATVKKN 754
            MLVNLSIPWVILGHSERRALL ESN+FVGDKVAYALSQGLKVIACVGETLE+RESGS + VVA QTKAIA+++ +W NVV+AYEPVWAIGTGKVA+PAQAQEVHAELRKWL  NVS EVAASTRII GGSVNGANCKEL  QPDVDGFLVGGA LKPEFIDIIK A VK+N
Sbjct:   83 MLVNLSIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEERESGSTMDVVAAQTKAIADRVKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHAELRKWLAANVSPEVAASTRIIYGGSVNGANCKELGGQPDVDGFLVGGASLKPEFIDIIKAAEVKRN 253          
BLAST of CF832875 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 4.521e-77
Identity = 141/171 (82.46%), Postives = 156/171 (91.23%), Query Frame = -2
Query:  242 MLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSPVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIISGGSVNGANCKELAAQPDVDGFLVGGAFLKPEFIDIIKFATVKKN 754
            MLVNL IPWVILGHSERRALLNESN+FVGDK AYALSQGLKVIACVGETLEQRE+GS ++VVA QTKAIAEK+S+W N+V+AYEPVWAIGTGKVA+PAQAQEVH ELRKW+K+NV A+VA S RII GGSVNGAN KELA QPD+DGFLVGGA LKPEF+DIIK ATVK +
Sbjct:   83 MLVNLGIPWVILGHSERRALLNESNEFVGDKTAYALSQGLKVIACVGETLEQREAGSTISVVAAQTKAIAEKVSDWTNIVVAYEPVWAIGTGKVASPAQAQEVHFELRKWIKENVGADVAGSVRIIYGGSVNGANSKELAGQPDIDGFLVGGASLKPEFVDIIKSATVKSS 253          
BLAST of CF832875 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.718e-76
Identity = 143/171 (83.63%), Postives = 156/171 (91.23%), Query Frame = -2
Query:  242 MLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSPVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIISGGSVNGANCKELAAQPDVDGFLVGGAFLKPEFIDIIKFATVKKN 754
            ML NL +PWVILGHSERRALLNE+N+FVGDKVAYALSQGLKVIACVGETLEQRE+G+ + VVA QTKAIA+KIS+WDNVVLAYEPVWAIGTGKVA+PAQAQEVHA LRKW  DNVSAEV+ASTRII GGSV+G+NCKEL  Q DVDGFLVGGA LKPEFIDIIK A VKK+
Sbjct:   24 MLANLGVPWVILGHSERRALLNETNEFVGDKVAYALSQGLKVIACVGETLEQREAGTTMEVVAAQTKAIADKISSWDNVVLAYEPVWAIGTGKVASPAQAQEVHAGLRKWFCDNVSAEVSASTRIIYGGSVSGSNCKELGGQTDVDGFLVGGASLKPEFIDIIKAAEVKKS 194          
BLAST of CF832875 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 283.493 bits (724), Expect = 8.526e-76
Identity = 144/169 (85.21%), Postives = 150/169 (88.76%), Query Frame = -2
Query:  248 MLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSPVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIISGGSVNGANCKELAAQPDVDGFLVGGAFLKPEFIDIIKFATVK 754
            MLVNL +PWVILGHSERRALL ESN+FVGDKVAYALSQGLKVIACVGETLEQRE+GS + VVA QTKAIAEKI +W NVV+AYEPVWAIGTGKVATPAQAQEVHA LR WLK N S EVA STRII GGSV  ANCKELAAQPDVDGFLVGGA LKPEFIDII  ATVK
Sbjct:   83 MLVNLGVPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAEKIKDWSNVVVAYEPVWAIGTGKVATPAQAQEVHASLRDWLKTNASPEVAESTRIIYGGSVTAANCKELAAQPDVDGFLVGGASLKPEFIDIINAATVK 251          
BLAST of CF832875 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 281.182 bits (718), Expect = 4.231e-75
Identity = 144/169 (85.21%), Postives = 152/169 (89.94%), Query Frame = -2
Query:  248 MLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSPVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIISGGSVNGANCKELAAQPDVDGFLVGGAFLKPEFIDIIKFATVK 754
            MLVNLSIPWVILGHSERR+LL ESN+FVGDKVAYALSQGLKVIACVGETLEQRESGS + VVA QTKAI+E+I +W NVV+AYEPVWAIGTGKVATP QAQEVH  LRKWL  NVSAEVA STRII GGSV GANCKELAA+PDVDGFLVGGA LKPEFIDII  ATVK
Sbjct:   83 MLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKDWTNVVVAYEPVWAIGTGKVATPDQAQEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFLVGGASLKPEFIDIINSATVK 251          
BLAST of CF832875 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 4.231e-75
Identity = 139/171 (81.29%), Postives = 155/171 (90.64%), Query Frame = -2
Query:  242 MLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSPVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIISGGSVNGANCKELAAQPDVDGFLVGGAFLKPEFIDIIKFATVKKN 754
            MLVNL IPWVILGHSERRA+LNES++FVGDKVAYAL+QGLKVIACVGETLE+RE+GS + VVA QTKAIA++++NW NVV+AYEPVWAIGTGKVA+PAQAQEVH ELRKWL  NVSA+VAA+TRII GGSVNG NCKEL  Q DVDGFLVGGA LKPEFIDIIK A VKK+
Sbjct:   83 MLVNLDIPWVILGHSERRAILNESSEFVGDKVAYALAQGLKVIACVGETLEEREAGSTMDVVAAQTKAIADRVTNWSNVVIAYEPVWAIGTGKVASPAQAQEVHDELRKWLAKNVSADVAATTRIIYGGSVNGGNCKELGGQADVDGFLVGGASLKPEFIDIIKAAEVKKS 253          
BLAST of CF832875 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 278.87 bits (712), Expect = 2.100e-74
Identity = 141/169 (83.43%), Postives = 153/169 (90.53%), Query Frame = -2
Query:  248 MLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSPVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIISGGSVNGANCKELAAQPDVDGFLVGGAFLKPEFIDIIKFATVK 754
            MLVNL IPWVILGHSERR+LL ES++FVG+KVAYAL+QGLKVIACVGETLEQRE+GS + VVAEQTKAIA+KI +W NVV+AYEPVWAIGTGKVA+PAQAQEVHA LR WLK NVS EVA STRII GGSV GA+CKELAAQPDVDGFLVGGA LKPEFIDII  ATVK
Sbjct:   83 MLVNLGIPWVILGHSERRSLLAESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIADKIKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQPDVDGFLVGGASLKPEFIDIINAATVK 251          
BLAST of CF832875 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 270.396 bits (690), Expect = 7.469e-72
Identity = 137/169 (81.07%), Postives = 148/169 (87.57%), Query Frame = -2
Query:  248 MLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSPVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIISGGSVNGANCKELAAQPDVDGFLVGGAFLKPEFIDIIKFATVK 754
            ML NL +PWVILGHSERR+LL ES++FVG+KVAYAL+QGLKVIACVGETLEQRE+GS + VVAEQTKAIA KI +W N V+AYEPVWAIGTGKVATPAQAQEVHA LR WLK NVS EVA STRII GGSV GA+CKELAAQ DVDGFLVGGA LKPEFIDII  A VK
Sbjct:   83 MLANLGVPWVILGHSERRSLLGESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIAGKIKDWSNGVVAYEPVWAIGTGKVATPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQADVDGFLVGGASLKPEFIDIINAAAVK 251          
BLAST of CF832875 vs. ExPASy Swiss-Prot
Match: TPIS_CULTA (Triosephosphate isomerase OS=Culex tarsalis GN=Tpi PE=1 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 5.932e-61
Identity = 111/163 (68.10%), Postives = 137/163 (84.05%), Query Frame = -2
Query:  266 MLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSPVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIISGGSVNGANCKELAAQPDVDGFLVGGAFLKPEFIDII 754
            ML +L+I WVILGHSERRA+  ES++ + DKVA+AL++GLKVIAC+GETL++RE+G   AV   QTKAIA+K+ +W NVV+AYEPVWAIGTGK A+P QAQEVHA LRKW  +NVSA+V+A+ RI  GGSV  ANC+ELAA+PD+DGFLVGGA LKPEFI I+
Sbjct:   81 MLKDLNIGWVILGHSERRAIFGESDELIADKVAHALAEGLKVIACIGETLQEREAGQTEAVCFRQTKAIADKVKDWSNVVIAYEPVWAIGTGKTASPEQAQEVHAALRKWFTENVSADVSAAIRIQYGGSVTAANCRELAAKPDIDGFLVGGASLKPEFIQIV 243          
BLAST of CF832875 vs. ExPASy Swiss-Prot
Match: TPIS_RABIT (Triosephosphate isomerase OS=Oryctolagus cuniculus GN=TPI1 PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.110e-58
Identity = 110/163 (67.48%), Postives = 129/163 (79.14%), Query Frame = -2
Query:  266 MLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSPVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIISGGSVNGANCKELAAQPDVDGFLVGGAFLKPEFIDII 754
            M+ +    WV+LGHSERR +  ES++ +G KVA+ALS+GL VIAC+GE L++RE+G    VV EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA STRII GGSV GA CKELA+QPDVDGFLVGGA LKPEF+DII
Sbjct:   82 MIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDII 244          
The following BLAST results are available for this feature:
BLAST of CF832875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PETHY9.109e-7885.38Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_COPJA4.521e-7782.46Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_LACSA1.718e-7683.63Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_MAIZE8.526e-7685.21Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_ORYSJ4.231e-7585.21Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_ARATH4.231e-7581.29Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_SECCE2.100e-7483.43Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_HORVU7.469e-7281.07Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_CULTA5.932e-6168.10Triosephosphate isomerase OS=Culex tarsalis GN=Tpi... [more]
TPIS_RABIT2.110e-5867.48Triosephosphate isomerase OS=Oryctolagus cuniculus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02J15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832875 ID=CF832875; Name=CF832875; organism=Citrus sinensis; type=EST; length=755bp
TTTTTTTTTTTTTTTTTGCAAGAAGGGAAAAGCAACCATTTCTCTAATCC
ACAATGATAAGTTTCAAATCCCCACTGAAATAGGAAAGAGATTCTTAAGA
ATTCTGAAGATTTAACTTATTATACTGGAAAGGCGTTGGTAACACTTAAC
AGACCACAAAAATTACAACGCTAGTTTCCAGAACGCATAACAGAGAAAAC
TGCAGGCATCAGCAAGCCGAGTAGCTTGGTCTTTAACTTCAATTCTTCTT
CACTGTGGCAAACTTGATAATATCGATGAACTCCGGCTTTAGAAAAGCTC
CACCAACCAAAAATCCATCCACATCAGGTTGTGCTGCCAATTCTTTGCAA
TTTGCTCCATTTACAGAACCTCCGGAGATGATTCTAGTTGATGCTGCAAC
TTCAGCACTGACATTGTCTTTAAGCCATTTCCTCAGTTCAGCATGGACTT
CCTGAGCCTGAGCAGGGGTTGCAACCTTCCCGGTACCAATGGCCCAAACT
GGCTCATAAGCCAACACAACATTGTCCCAGTTGGATATTTTTTCTGCGAT
TGCTTTTGTTTGTTCAGCCACAACAGCCACTGGAGATCCTGATTCTCGCT
GTTCCAGAGTCTCTCCAACACAAGCAATGACTTTCAAGCCTTGAGAAAGT
GCATAAGCAACTTTATCTCCAACAAAATCATTTGACTCATTCAAAAGAGC
TCTTCTTTCAGAATGACCAAGAATGACCCAAGGAATGCTCAAGTTGACAA
GCATC
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