CF832887

Overview
NameCF832887
Unique NameCF832887
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length351
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832887_ssr161 microsatellite CF832887_ssr161:161..172. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8490 contig Csv1_Contig8490:86..436. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832887 vs. ExPASy Swiss-Prot
Match: PR1A1_ARATH (PRA1 family protein A1 OS=Arabidopsis thaliana GN=PRA1A1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.565e-14
Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = -1 
Query:   16 MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRFTGPRSSAK 141
            MDWGNVT +DL DALREVDWSSPPRP SEFFSRFT P+S  K
Sbjct:    1 MDWGNVTVDDLFDALREVDWSSPPRPPSEFFSRFTVPKSVPK 42
[Close]
BLAST of CF832887 vs. ExPASy Swiss-Prot
Match: PR1A2_ARATH (PRA1 family protein A2 OS=Arabidopsis thaliana GN=PRA1A2 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.803e-11
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = -1 
Query:   16 MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRFTGPRSSAK 141
            MDW NV AED+I+ALREV+WS+PPR   EFFSRF  PRS +K
Sbjct:    1 MDWDNVAAEDVIEALREVEWSTPPRSFGEFFSRFAFPRSFSK 42
The following BLAST results are available for this feature:
BLAST of CF832887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PR1A1_ARATH9.565e-1480.95PRA1 family protein A1 OS=Arabidopsis thaliana GN=... [more]
PR1A2_ARATH5.803e-1169.05PRA1 family protein A2 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02J22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832887 ID=CF832887; Name=CF832887; organism=Citrus sinensis; type=EST; length=351bp
TTCATCGGCTGTTCATTTGGCGGAGGATCTCGGACCTGTGAACCTGGAGA
AGAACTCGGAGAGAGGACGCGGTGGCGACGACCAGTCAACTTCACGAAGC
GCGTCGATAAGATCTTCTGCTGTTACGTTTCCCCAATCCATCGCTTGATT
ACTACTATTGTTATTATTATTATAATATTCCGCTCTTCCGAAACCCTAGA
AAACGATTTATTTTGTGCAAAATAAAATGAAGCGCGAAACCCTAGGCAGA
TTAAGAGAGAGTCGAGGCTGTGGCTGTGGGTTTCCTGCGATGTGATGAAG
AGAATTGAATTGAATGGGGACTTGTGCAGTGAGCCAGGGAATGACTTAAC
G
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