CF832913

Overview
NameCF832913
Unique NameCF832913
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: SSDH_ARATH (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=ALDH5F1 PE=1 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 1.788e-52
Identity = 98/119 (82.35%), Postives = 111/119 (93.28%), Query Frame = -1 
Query:  307 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDMNR 663
            FYEPTV+ +V   M++S+EE+FGPVAPL+ FKTEE+AI +ANDT AGLAAYIFTN++QR+WRV EALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDE+LEIKYVCLGDMNR
Sbjct:  409 FYEPTVIRDVSDNMIMSKEEIFGPVAPLIRFKTEEDAIRIANDTIAGLAAYIFTNSVQRSWRVFEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEYLEIKYVCLGDMNR 527
[Close]
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: SSDH_ORYSJ (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Oryza sativa subsp. japonica GN=ALDH5F1 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 6.796e-52
Identity = 95/118 (80.51%), Postives = 111/118 (94.07%), Query Frame = -1 
Query:  310 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDMN 663
            FYEPTV+ NV ++ML+ REEVFGPVAPL+ FKTEE+AI MANDTNAGLAAYIFT ++ R+WRVSEALEYGLVGVNEG+ISTEVAPFGGVKQSGLGREGSKYGMDE+LE+KY+C+G++N
Sbjct:  410 FYEPTVVGNVSNDMLLFREEVFGPVAPLVPFKTEEDAIRMANDTNAGLAAYIFTKSIPRSWRVSEALEYGLVGVNEGIISTEVAPFGGVKQSGLGREGSKYGMDEYLELKYICMGNLN 527
[Close]
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: SSDH_PONPY (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Pongo pygmaeus GN=ALDH5A1 PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 3.620e-37
Identity = 72/117 (61.54%), Postives = 92/117 (78.63%), Query Frame = -1 
Query:  313 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDM 663
            F+EPT+L NV  +ML + EE FGP+AP++ F TEEEAI +AN  + GLA Y ++ +  + WRV+E LE G+VGVNEGLIS+   PFGGVKQSGLGREGSKYG+DE+LE+KYVC G +
Sbjct:  419 FFEPTLLCNVTQDMLCTHEETFGPLAPVIKFNTEEEAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLGREGSKYGIDEYLELKYVCYGGL 535
[Close]
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: SSDH_PANTR (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Pan troglodytes GN=ALDH5A1 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.728e-37
Identity = 72/117 (61.54%), Postives = 92/117 (78.63%), Query Frame = -1 
Query:  313 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDM 663
            F+EPT+L NV  +ML + EE FGP+AP++ F TEEEAI +AN  + GLA Y ++ +  + WRV+E LE G+VGVNEGLIS+   PFGGVKQSGLGREGSKYG+DE+LE+KYVC G +
Sbjct:  419 FFEPTLLCNVTQDMLCTHEETFGPLAPVIKFDTEEEAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLGREGSKYGIDEYLELKYVCYGGL 535
[Close]
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: SSDH_PANPA (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Pan paniscus GN=ALDH5A1 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.728e-37
Identity = 72/117 (61.54%), Postives = 92/117 (78.63%), Query Frame = -1 
Query:  313 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDM 663
            F+EPT+L NV  +ML + EE FGP+AP++ F TEEEAI +AN  + GLA Y ++ +  + WRV+E LE G+VGVNEGLIS+   PFGGVKQSGLGREGSKYG+DE+LE+KYVC G +
Sbjct:  419 FFEPTLLCNVTQDMLCTHEETFGPLAPVIKFDTEEEAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLGREGSKYGIDEYLELKYVCYGGL 535
[Close]
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: SSDH_HYLLA (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Hylobates lar GN=ALDH5A1 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.728e-37
Identity = 72/117 (61.54%), Postives = 92/117 (78.63%), Query Frame = -1 
Query:  313 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDM 663
            F+EPT+L NV  +ML + EE FGP+AP++ F TEEEAI +AN  + GLA Y ++ +  + WRV+E LE G+VGVNEGLIS+   PFGGVKQSGLGREGSKYG+DE+LE+KYVC G +
Sbjct:  419 FFEPTLLCNVTQDMLCTHEETFGPLAPVIKFDTEEEAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLGREGSKYGIDEYLELKYVCYGGL 535
[Close]
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: SSDH_HUMAN (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH5A1 PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 4.728e-37
Identity = 72/117 (61.54%), Postives = 92/117 (78.63%), Query Frame = -1 
Query:  313 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDM 663
            F+EPT+L NV  +ML + EE FGP+AP++ F TEEEAI +AN  + GLA Y ++ +  + WRV+E LE G+VGVNEGLIS+   PFGGVKQSGLGREGSKYG+DE+LE+KYVC G +
Sbjct:  419 FFEPTLLCNVTQDMLCTHEETFGPLAPVIKFDTEEEAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLGREGSKYGIDEYLELKYVCYGGL 535
[Close]
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: SSDH_GORGO (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Gorilla gorilla gorilla GN=ALDH5A1 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.728e-37
Identity = 72/117 (61.54%), Postives = 92/117 (78.63%), Query Frame = -1 
Query:  313 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDM 663
            F+EPT+L NV  +ML + EE FGP+AP++ F TEEEAI +AN  + GLA Y ++ +  + WRV+E LE G+VGVNEGLIS+   PFGGVKQSGLGREGSKYG+DE+LE+KYVC G +
Sbjct:  419 FFEPTLLCNVTQDMLCTHEETFGPLAPVIKFDTEEEAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLGREGSKYGIDEYLELKYVCYGGL 535
[Close]
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: GABD_ECOLI (Succinate-semialdehyde dehydrogenase [NADP+] OS=Escherichia coli (strain K12) GN=gabD PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.176e-37
Identity = 70/115 (60.87%), Postives = 91/115 (79.13%), Query Frame = -1 
Query:  319 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLG 663
            F++PT+L +V +   VS+EE FGP+APL  FK E + I  ANDT  GLAAY +  +L R +RV EALEYG+VG+N G+IS EVAPFGG+K SGLGREGSKYG++++LEIKY+C+G
Sbjct:  367 FFQPTILVDVPANAKVSKEETFGPLAPLFRFKDEADVIAQANDTEFGLAAYFYARDLSRVFRVGEALEYGIVGINTGIISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYMCIG 481
[Close]
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: SSDH_RAT (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Aldh5a1 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.053e-36
Identity = 72/117 (61.54%), Postives = 91/117 (77.78%), Query Frame = -1 
Query:  313 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDM 663
            F+EPT+LSNV  +ML   EE FGPVAP++ F  EEEA+ +AN  + GLA Y ++ +  + WRV+E LE G+VGVNEGLIS+   PFGGVKQSGLGREGSKYG+DE+LE+KYVC G +
Sbjct:  407 FFEPTLLSNVTRDMLCITEETFGPVAPVIKFDKEEEAVAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLGREGSKYGIDEYLEVKYVCYGGL 523
The following BLAST results are available for this feature:
BLAST of CF832913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
SSDH_ARATH1.788e-5282.35Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_ORYSJ6.796e-5280.51Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_PONPY3.620e-3761.54Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_PANTR4.728e-3761.54Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_PANPA4.728e-3761.54Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_HYLLA4.728e-3761.54Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_HUMAN4.728e-3761.54Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_GORGO4.728e-3761.54Succinate-semialdehyde dehydrogenase, mitochondria... [more]
GABD_ECOLI6.176e-3760.87Succinate-semialdehyde dehydrogenase [NADP+] OS=Es... [more]
SSDH_RAT1.053e-3661.54Succinate-semialdehyde dehydrogenase, mitochondria... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02K13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832913 ID=CF832913; Name=CF832913; organism=Citrus sinensis; type=EST; length=663bp
TTTTTTTTTTTCTGACACCAGACATTCAAGTTCCATTTTGCAAACTTATT
TATGTACATGGGGTATCAATAGCAAACCACCTATGGCTCACTACTAGACA
TTCAAGTTCCATTTTGCAAACTTATTTATGTACATGGGGTATCAATAGCA
AACCAACTATGGCTCACTACTACCTCCACATCAAACGCTTGAGGCTCACA
CTATTCCAATCCGTCTTCAAAATACAGTTCAAAGGCAGTACTAAAGGCTC
CTTCCTTCTTCTCCATAAGCCCGGTAACATACAGGTACAAAACTGGCCCA
TCATTTTCTGTTCATGTCTCCCAAGCACACATATTTTATTTCCAGGAATT
CATCCATCCCATACTTTGAACCTTCCCGTCCAAGACCAGATTGTTTAACA
CCACCAAAAGGAGCCACCTCTGTTGAAATTAATCCTTCATTAACACCAAC
GAGTCCATATTCTAGAGCTTCAGAGACACGCCATGTACGTTGAAGATTGT
TTGTAAATATATAAGCAGCTAACCCTGCATTGGTATCATTGGCCATATGG
ATAGCTTCCTCCTCAGTTTTGAAGCATAGAAGTGGGGCCACAGGTCCGAA
TACTTCCTCTCTCGAAACAAGCATCTCACTCTTGACATTGCTAAGGACTG
TAGGCTCATAAAA
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