CF832967

Overview
NameCF832967
Unique NameCF832967
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832967_ssr28 microsatellite CF832967_ssr28:28..39. BLAST: Citrus ESTs to Prunus persica proteins V1
CF832967_ssr182 microsatellite CF832967_ssr182:182..196. BLAST: Citrus ESTs to Prunus persica proteins V1
CF832967_ssr211 microsatellite CF832967_ssr211:211..222. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5981 contig Csv1_Contig5981:101..971. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF832967 vs. ExPASy Swiss-Prot
Match: SELT_ARATH (SelT-like protein OS=Arabidopsis thaliana GN=At3g47300 PE=2 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 6.544e-57
Identity = 107/157 (68.15%), Postives = 127/157 (80.89%), Query Frame = 2 
Query:  251 TPDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLSKXXXXXXXXXXXXXXXXEQIFPMLGMTPPP-WYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVA 718
            T DFP+QK  G +GYG+TV INFC SCSY+GTA++MK+MLE+ FPG+DVVLANYP P PKR+L+K                EQIFPM+G+  PP WY+SLRANRFGS+ASTWL+GNFLQSFLQSSGAFEV CN +LVFSKLKEGRFPGEIEL+DL++
Sbjct:   42 TLDFPAQKSTG-VGYGNTVEINFCISCSYKGTAVSMKKMLESVFPGLDVVLANYPAPAPKRILAKVVPVAQVGVIGLIMGGEQIFPMIGIAQPPAWYHSLRANRFGSMASTWLLGNFLQSFLQSSGAFEVSCNGELVFSKLKEGRFPGEIELRDLIS 197
[Close]
BLAST of CF832967 vs. ExPASy Swiss-Prot
Match: HSP6_HETGL (Putative esophageal gland cell secretory protein 6 OS=Heterodera glycines GN=HSP6 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.605e-16
Identity = 44/145 (30.34%), Postives = 71/145 (48.97%), Query Frame = 2 
Query:  305 VNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLSKXXXXXXXXXXXXXXXXEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSR 739
            V  +FC SC YR       ++L  ++PGID+   NYPP + + + ++                   FP LG+  P ++  + +NR  +    +L  N ++  LQS+GAFE+Y   + ++SKL+ GR P   EL   +   LA  R
Sbjct:   83 VKFSFCVSCGYRQAYEQFAQILREKYPGIDIHGENYPPGILRTVGAQVIGMVKIALIVCVVSGRSPFPTLGLETPTFFQWMLSNRLSAALMLFLFSNAIEGMLQSTGAFEIYIESERIWSKLESGRVPSPPELFQAIDSHLAIRR 227
[Close]
BLAST of CF832967 vs. ExPASy Swiss-Prot
Match: SELT_DROME (SelT-like protein OS=Drosophila melanogaster GN=CG3887 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.993e-13
Identity = 47/148 (31.76%), Postives = 67/148 (45.27%), Query Frame = 2 
Query:  284 GIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLSKXXXXXXXXXXXXXXXXEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQL 727
            G     T+   +C SC YR        +L  ++P I V   NY PP     LSK                   F  LG+  P W+  ++AN+  +    + +GN L++ L SSGAFE+  ND  V+SKL+ GRFP    L  ++   L
Sbjct:   37 GQNIAPTMTFLYCYSCGYRKAFEDYVGLLGEKYPQIQVNGGNYDPPGLNYYLSKMIFALKIIIIVSVVSAVSPFTFLGLNTPSWWSHMQANKIYACMMIFFLGNMLEAQLISSGAFEITLNDVPVWSKLQTGRFPSPEVLFQIIDNHL 184
The following BLAST results are available for this feature:
BLAST of CF832967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SELT_ARATH6.544e-5768.15SelT-like protein OS=Arabidopsis thaliana GN=At3g4... [more]
HSP6_HETGL5.605e-1630.34Putative esophageal gland cell secretory protein 6... [more]
SELT_DROME1.993e-1331.76SelT-like protein OS=Drosophila melanogaster GN=CG... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02M01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832967 ID=CF832967; Name=CF832967; organism=Citrus sinensis; type=EST; length=871bp
CCAATTTTTTAGTCACGTCGATATATTTTCTTCTTCTTCGAATTGTTGTT
CTCTCTTTCACAGACTCGTAAAATCCCAACAAAATCATAGTTTTAATCTA
CAAATGGATCGGCTAAATATCCTTCTTCTGGGTCTCCCTCTCTTTCTTCT
CTGCAGCGACCTCTTAAATCTTTTCACTCCTCCGCCGCCGCCGCCGCCAA
AATCCGCTTCCCACCACCACCATAAACCGCCTATACCTTCGGAAAACCTA
ACCCCAGACTTTCCTTCACAGAAAATTGTCGGAGGAATTGGGTATGGCAG
TACTGTTAATATCAACTTTTGTGCTTCTTGCTCTTATAGGGGCACTGCAA
TAACAATGAAAAGGATGTTGGAGACTCAGTTTCCTGGGATTGATGTGGTC
CTTGCAAATTATCCCCCACCCCTGCCAAAGCGTCTACTTTCTAAAGTGGT
GCCTGCTGTTCAGATAGGGGTTATTGGGATCGTAGTGGCAGGCGAACAGA
TTTTTCCGATGCTGGGAATGACACCACCTCCATGGTATTATTCGCTGCGT
GCCAATAGGTTTGGGTCCATAGCATCTACCTGGCTTATTGGAAACTTTTT
GCAGTCCTTCCTCCAAAGCTCTGGGGCTTTTGAAGTTTACTGTAATGATG
ACTTGGTCTTCTCTAAACTGAAGGAGGGGAGGTTTCCAGGCGAGATTGAG
CTAAAAGATCTTGTTGCCAAACAATTGGCTTCATCAAGACTTGTGGATGG
TGTTGGAAGTGTATGGTCCTAGTTCATTCACTGGACATTGAGGGTTGGAA
TCAAAGGATTGACTGAGAGCCTTGTACAAGATTTCATTATCTAGGTTGTT
ATGGCAAATATATAAACAGAT
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