CF832995

Overview
NameCF832995
Unique NameCF832995
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832995_ssr390 microsatellite CF832995_ssr390:390..401. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9835 contig Csv1_Contig9835:52..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF832995 vs. ExPASy Swiss-Prot
Match: TOP6B_ARATH (DNA topoisomerase 6 subunit B OS=Arabidopsis thaliana GN=TOP6B PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.442e-60
Identity = 120/171 (70.18%), Postives = 143/171 (83.63%), Query Frame = -2 
Query:  173 GVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSRYVPDATYAVYDVLKEISKFHASKKRRYXXXXEDPPRKVQSRSITKETLKEMLAQYVEKVDYEMALEYATQSGVNEEPREAIYIQALE-DGYNFTDLHSSNFVFRFI 682
            GVFVSIVSTKIPFKGTGKEYIGDD  EIA+AVKSAIQQCCIQLKSKIV+++Q REQQERKR+LSRY+PDAT AVY+VLK++++ H +K++RY         KV  + ITKETLKE LA++VE+VDYEMALEYATQSGV+EEPRE IY+Q L+ +  NF DLHS  FVFR +
Sbjct:  499 GVFVSIVSTKIPFKGTGKEYIGDDISEIATAVKSAIQQCCIQLKSKIVKRLQAREQQERKRSLSRYIPDATGAVYEVLKQMTEEHKTKRKRYGEEDIVMLDKVSKQIITKETLKEKLAEHVEQVDYEMALEYATQSGVSEEPRENIYLQHLDPNKSNFIDLHSPTFVFRLM 669
The following BLAST results are available for this feature:
BLAST of CF832995 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TOP6B_ARATH1.442e-6070.18DNA topoisomerase 6 subunit B OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02M17_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02M17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832995 ID=CF832995; Name=CF832995; organism=Citrus sinensis; type=EST; length=683bp
TTTTTTTTTGCCGCTATTGGAATTACATTTAGCTCTCAAACGTATCGTTT
TCTAAATTTTAATACATGGGAACCAAATAATAACATGAACTATATAACAA
ATACTTGTTCAAAAATATCGGAAATCTAATTGTTAAAAAAAATAAAAAGC
AAAATTTGACATGTTCCTACGGGATGAATCTGAAGACAAAGTTGGAACTG
TGCAAGTCAGTGAAGTTATATCCATCTTCAAGTGCTTGTATGTATATAGC
TTCCCTTGGTTCCTCGTTCACCCCGCTTTGTGTCGCATACTCCAATGCCA
TCTCGTAGTCTACCTTTTCAACATATTGAGCAAGCATTTCTTTCAGAGTC
TCTTTTGTGATTGACCGAGACTGGACTTTCCTAGGAGGATCTTCTTCTTC
TTCCTCGTATCTCCTCTTCTTTGAGGCATGGAATTTTGAAATTTCTTTCA
AAACGTCATATACAGCGTATGTAGCATCAGGTACGTACCTGCTCAAATTT
CGCTTTCTCTCCTGCTGCTCACGATCCTGAATTTTTCGCACTATTTTTGA
TTTTAGCTGGATGCAGCACTGTTGAATAGCAGACTTGACTGCTGAAGCAA
TCTCTTTGGTATCATCTCCAATGTACTCCTTTCCAGTTCCTTTGAATGGG
ATTTTGGTACTAACAATACTCACGAAGACACCA
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