CF833004

Overview
NameCF833004
Unique NameCF833004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig32 contig Csv1_Contig32:325..811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF833004 vs. ExPASy Swiss-Prot
Match: TM9S2_RAT (Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.818e-14
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = -3 
Query:  327 FFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 485
            FF+KL+IT   S ILYFGY +I+   FF+ TGTIGF+ACFWFV KIYS VK+D
Sbjct:  611 FFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
[Close]
BLAST of CF833004 vs. ExPASy Swiss-Prot
Match: TM9S2_PONAB (Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.818e-14
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = -3 
Query:  327 FFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 485
            FF+KL+IT   S ILYFGY +I+   FF+ TGTIGF+ACFWFV KIYS VK+D
Sbjct:  611 FFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
[Close]
BLAST of CF833004 vs. ExPASy Swiss-Prot
Match: TM9S2_MOUSE (Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.818e-14
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = -3 
Query:  327 FFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 485
            FF+KL+IT   S ILYFGY +I+   FF+ TGTIGF+ACFWFV KIYS VK+D
Sbjct:  610 FFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 662
[Close]
BLAST of CF833004 vs. ExPASy Swiss-Prot
Match: TM9S2_HUMAN (Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.818e-14
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = -3 
Query:  327 FFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 485
            FF+KL+IT   S ILYFGY +I+   FF+ TGTIGF+ACFWFV KIYS VK+D
Sbjct:  611 FFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
[Close]
BLAST of CF833004 vs. ExPASy Swiss-Prot
Match: TM9S4_RAT (Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.916e-11
Identity = 29/53 (54.72%), Postives = 41/53 (77.36%), Query Frame = -3 
Query:  327 FFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 485
            F  KL+I + +  +LYFGY  ++  +F++LTGTIGFYA + FVRKIY++VKID
Sbjct:  591 FVNKLDIVEFIPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643
[Close]
BLAST of CF833004 vs. ExPASy Swiss-Prot
Match: TM9S4_PONAB (Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.916e-11
Identity = 29/53 (54.72%), Postives = 41/53 (77.36%), Query Frame = -3 
Query:  327 FFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 485
            F  KL+I + +  +LYFGY  ++  +F++LTGTIGFYA + FVRKIY++VKID
Sbjct:  590 FVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642
[Close]
BLAST of CF833004 vs. ExPASy Swiss-Prot
Match: TM9S4_MOUSE (Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.916e-11
Identity = 29/53 (54.72%), Postives = 41/53 (77.36%), Query Frame = -3 
Query:  327 FFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 485
            F  KL+I + +  +LYFGY  ++  +F++LTGTIGFYA + FVRKIY++VKID
Sbjct:  591 FVNKLDIVEFIPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643
[Close]
BLAST of CF833004 vs. ExPASy Swiss-Prot
Match: TM9S4_HUMAN (Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.916e-11
Identity = 29/53 (54.72%), Postives = 41/53 (77.36%), Query Frame = -3 
Query:  327 FFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 485
            F  KL+I + +  +LYFGY  ++  +F++LTGTIGFYA + FVRKIY++VKID
Sbjct:  590 FVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642
[Close]
BLAST of CF833004 vs. ExPASy Swiss-Prot
Match: TM9S4_BOVIN (Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.916e-11
Identity = 29/53 (54.72%), Postives = 41/53 (77.36%), Query Frame = -3 
Query:  327 FFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 485
            F  KL+I + +  +LYFGY  ++  +F++LTGTIGFYA + FVRKIY++VKID
Sbjct:  590 FVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642
The following BLAST results are available for this feature:
BLAST of CF833004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
TM9S2_RAT2.818e-1466.04Transmembrane 9 superfamily member 2 OS=Rattus nor... [more]
TM9S2_PONAB2.818e-1466.04Transmembrane 9 superfamily member 2 OS=Pongo abel... [more]
TM9S2_MOUSE2.818e-1466.04Transmembrane 9 superfamily member 2 OS=Mus muscul... [more]
TM9S2_HUMAN2.818e-1466.04Transmembrane 9 superfamily member 2 OS=Homo sapie... [more]
TM9S4_RAT2.916e-1154.72Transmembrane 9 superfamily member 4 OS=Rattus nor... [more]
TM9S4_PONAB2.916e-1154.72Transmembrane 9 superfamily member 4 OS=Pongo abel... [more]
TM9S4_MOUSE2.916e-1154.72Transmembrane 9 superfamily member 4 OS=Mus muscul... [more]
TM9S4_HUMAN2.916e-1154.72Transmembrane 9 superfamily member 4 OS=Homo sapie... [more]
TM9S4_BOVIN2.916e-1154.72Transmembrane 9 superfamily member 4 OS=Bos taurus... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02M22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02M22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833004 ID=CF833004; Name=CF833004; organism=Citrus sinensis; type=EST; length=487bp
TTTTTTTTTTTTTTTCTAATAAAAAATCGATAACACAGAATACCCCTTAA
TTCATGATTTTAATGGTGAAAATCAGATAAGCATAACCAGAAGACAATCT
AAACTTCTTGCATAGAAACTAATGGAAGTACACGTTTGATTTTTGTAGTG
TAAACATAACAACACATGCACATTGCTCATCCCTACTCTATTTCAAAATA
AAAAACGGTTTTCAGGAAAATGGGAAATAAACTTCCCATGGTGTAAATCT
GCAGATACAGTCAATATGGTTCAGACTCTTTGCTTCATCTACTACTTGTC
CAAGGATCTTCAAAATATCCAGATTAGTCAATTTTCACGGAGGAATAGAT
CTTGCGTACAAACCAGAAGCATGCGTAAAAGCCAATTGTCCCCGTCAAGA
CAAAGAAAGCATACGAAACAATTACCATGTACCCAAAGTAAAGGATGCCC
GAAACCAGCTTTGTAATTTCCAACTTGGTGAAGAAGT
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