CF833009

Overview
NameCF833009
Unique NameCF833009
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF833009_ssr120 microsatellite CF833009_ssr120:120..131. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig942 contig Csv1_Contig942:489..965. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF833009 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.185e-14
Identity = 36/81 (44.44%), Postives = 51/81 (62.96%), Query Frame = -1 
Query:  202 NYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGTYKIVHCPSVCEYCVKLCNILGRWFEDGF*RLVLVRDDELAF 444
            NYD ++GKW++TT G+ G PG  TL +WFK+EK G     YK   CPSVC+ C  LC+ +GR  +D     + + D+E A+
Sbjct:  126 NYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVL--GYKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRLALSDNEWAW 204
[Close]
BLAST of CF833009 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 2.873e-11
Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = -1 
Query:  202 YDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGTYKIVHCPSVCEYCVKLCNILGRWFEDGF*RLVLVRDDELAF 441
            YD ++G++F+T GG+ G+PG ET+ +WFK+E+     G YK+V CP+VC  C   C  +G + +    R + + D   AF
Sbjct:  134 YDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCG-SGFYKLVFCPTVCGSCKVKCGDVGIYIDQKGRRRLALSDKPFAF 212
The following BLAST results are available for this feature:
BLAST of CF833009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASP_THECC6.185e-1444.4421 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU2.873e-1138.75Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02M24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833009 ID=CF833009; Name=CF833009; organism=Citrus sinensis; type=EST; length=477bp
AATTCCATTTTAAGGCATACACCAACAATACAATTTATTAACCCCGAAAG
GATCACTGGGTTTCTTATTCATAATTTTAATCCTAAAGATTAAAGAGCAG
CTATCCTGGTCCGTTATTTATAATAATAATACCGCTAGCTGGTTAGGGTA
CATTGATTACACAGACGTTGATCTTTCTGGAGCGGGAATTAACACAACAG
GAAATGCCAGCTCATCATCACGAACCAAAACCAAACGTCAAAAGCCATCC
TCAAACCAACGGCCAAGGATGTTGCAGAGTTTGACACAATACTCGCAAAC
GGATGGACAATGAACAATTTTGTATGTACCTGGAAAATTTCCAATTTTCT
CAAGCTTAAACCAATTTAGCAAAGTTTCAGCTCCAGGGTGACCATCAAGT
CCCCCGGTTGTTATAAACCATTTGCCTGATGCCGCATCATAATTATGATA
ATAAAGGGTTTTAAAGAGCATATTTGG
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