CF833040

Overview
NameCF833040
Unique NameCF833040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13130 contig Csv1_Contig13130:874..1508. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833040 vs. ExPASy Swiss-Prot
Match: ALEU_ARATH (Thiol protease aleurain OS=Arabidopsis thaliana GN=ALEU PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 5.842e-58
Identity = 102/121 (84.30%), Postives = 112/121 (92.56%), Query Frame = -1
Query:  273 CKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPASVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHPVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 635
            CKFS+ENVGVQVL+SVNITLGAEDEL+HAVGLVRP S+AFEV+  FR YKSGVY+ + CG+TPMDVNH V+AVGYGVEDGVPYWLIKNSWG +WGD GYFKMEMGKNMCGIATCASYPVVA
Sbjct:  238 CKFSAENVGVQVLNSVNITLGAEDELKHAVGLVRPVSIAFEVIHSFRLYKSGVYTDSHCGSTPMDVNHAVLAVGYGVEDGVPYWLIKNSWGADWGDKGYFKMEMGKNMCGIATCASYPVVA 358          
BLAST of CF833040 vs. ExPASy Swiss-Prot
Match: CYSP2_MAIZE (Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.220e-57
Identity = 101/121 (83.47%), Postives = 110/121 (90.91%), Query Frame = -1
Query:  273 CKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPASVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHPVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 635
            CKF +ENVGV+VLDSVNITLGAEDEL+ AVGLVRP SVAFEV+ GFR YKSGVY+S  CG TPMDVNH V+AVGYGVEDGVPYWLIKNSWG +WGD GYFKMEMGKNMCG+ATCASYP+VA
Sbjct:  240 CKFKNENVGVKVLDSVNITLGAEDELKDAVGLVRPVSVAFEVITGFRLYKSGVYTSDHCGTTPMDVNHAVLAVGYGVEDGVPYWLIKNSWGADWGDEGYFKMEMGKNMCGVATCASYPIVA 360          
BLAST of CF833040 vs. ExPASy Swiss-Prot
Match: ALEUL_ARATH (Thiol protease aleurain-like OS=Arabidopsis thaliana GN=At3g45310 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.102e-56
Identity = 100/121 (82.64%), Postives = 110/121 (90.91%), Query Frame = -1
Query:  273 CKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPASVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHPVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 635
            CKFS++N+GVQV DSVNITLGAEDEL+HAVGLVRP SVAFEVV  FRFYK GV++S  CGNTPMDVNH V+AVGYGVED VPYWLIKNSWG  WGD+GYFKMEMGKNMCG+ATC+SYPVVA
Sbjct:  238 CKFSAKNIGVQVRDSVNITLGAEDELKHAVGLVRPVSVAFEVVHEFRFYKKGVFTSNTCGNTPMDVNHAVLAVGYGVEDDVPYWLIKNSWGGEWGDNGYFKMEMGKNMCGVATCSSYPVVA 358          
BLAST of CF833040 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.078e-55
Identity = 97/121 (80.17%), Postives = 111/121 (91.74%), Query Frame = -1
Query:  273 CKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPASVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHPVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 635
            C +  ENVGV+VLDSVNITLGAEDEL++AVGLVRP SVAF+V++GFR YKSGVY+S  CG +PMDVNH V+AVGYGVE+GVPYWLIKNSWG +WGD+GYFKMEMGKNMCGIATCASYP+VA
Sbjct:  242 CHYKPENVGVKVLDSVNITLGAEDELKNAVGLVRPVSVAFQVINGFRMYKSGVYTSDHCGTSPMDVNHAVLAVGYGVENGVPYWLIKNSWGADWGDNGYFKMEMGKNMCGIATCASYPIVA 362          
BLAST of CF833040 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.945e-53
Identity = 94/121 (77.69%), Postives = 109/121 (90.08%), Query Frame = -1
Query:  273 CKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPASVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHPVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 635
            CKFS  N+GV+V+ SVNITLGAE EL++AV LVRP SVAFEVV GF+ YKSGVY+ST+CG+TPMDVNH V+AVGYGVE+G PYWLIKNSWG +WG+ GYFKMEMGKNMCG+ATCASYP+VA
Sbjct:  236 CKFSQANIGVKVISSVNITLGAEYELKYAVALVRPVSVAFEVVKGFKQYKSGVYASTECGDTPMDVNHAVLAVGYGVENGTPYWLIKNSWGADWGEDGYFKMEMGKNMCGVATCASYPIVA 356          
BLAST of CF833040 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.945e-53
Identity = 96/121 (79.34%), Postives = 107/121 (88.43%), Query Frame = -1
Query:  273 CKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPASVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHPVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 635
            C + +EN  VQVLDSVNITL AEDEL++AVGLVRP SVAF+V+DGFR YKSGVY+S  CG TP DVNH V+AVGYGVE+GVPYWLIKNSWG +WGD+GYFKMEMGKNMC IATCASYPVVA
Sbjct:  241 CHYKAENAAVQVLDSVNITLNAEDELKNAVGLVRPVSVAFQVIDGFRQYKSGVYTSDHCGTTPDDVNHAVLAVGYGVENGVPYWLIKNSWGADWGDNGYFKMEMGKNMCAIATCASYPVVA 361          
BLAST of CF833040 vs. ExPASy Swiss-Prot
Match: CATH_RAT (Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.209e-36
Identity = 68/119 (57.14%), Postives = 83/119 (69.75%), Query Frame = -1
Query:  279 CKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPASVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHPVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPV 635
            CKF+ E     V + VNITL  E  +  AV L  P S AFEV + F  YKSGVYSS  C  TP  VNH V+AVGYG ++G+ YW++KNSWG NWG++GYF +E GKNMCG+A CASYP+
Sbjct:  212 CKFNPEKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTEDFMMYKSGVYSSNSCHKTPDKVNHAVLAVGYGEQNGLLYWIVKNSWGSNWGNNGYFLIERGKNMCGLAACASYPI 330          
BLAST of CF833040 vs. ExPASy Swiss-Prot
Match: CATH_PIG (Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.829e-35
Identity = 65/119 (54.62%), Postives = 81/119 (68.07%), Query Frame = -1
Query:  279 CKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPASVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHPVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPV 635
            CKF  +     V D  NIT+  E+ +  AV L  P S AFEV + F  Y+ G+YSST C  TP  VNH V+AVGYG E+G+PYW++KNSWG  WG +GYF +E GKNMCG+A CASYP+
Sbjct:  214 CKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASYPI 332          
BLAST of CF833040 vs. ExPASy Swiss-Prot
Match: CATH_BOVIN (Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.022e-34
Identity = 65/119 (54.62%), Postives = 78/119 (65.55%), Query Frame = -1
Query:  279 CKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPASVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHPVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPV 635
            CK+        V D  NITL  E+ +  AV L  P S AFEV   F  Y+ G+YSST C  TP  VNH V+AVGYG E G+PYW++KNSWG NWG  GYF +E GKNMCG+A CAS+P+
Sbjct:  214 CKYQPSKAIAFVKDVANITLNDEEAMVEAVALHNPVSFAFEVTADFMMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEEKGIPYWIVKNSWGPNWGMKGYFLIERGKNMCGLAACASFPI 332          
BLAST of CF833040 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.641e-34
Identity = 65/119 (54.62%), Postives = 82/119 (68.91%), Query Frame = -1
Query:  279 CKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPASVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHPVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPV 635
            C+F+ +     V + VNITL  E  +  AV L  P S AFEV + F  YKSGVYSS  C  TP  VNH V+AVGYG ++G+ YW++KNSWG  WG++GYF +E GKNMCG+A CASYP+
Sbjct:  212 CRFNPQKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTEDFLMYKSGVYSSKSCHKTPDKVNHAVLAVGYGEQNGLLYWIVKNSWGSQWGENGYFLIERGKNMCGLAACASYPI 330          
The following BLAST results are available for this feature:
BLAST of CF833040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
ALEU_ARATH5.842e-5884.30Thiol protease aleurain OS=Arabidopsis thaliana GN... [more]
CYSP2_MAIZE2.220e-5783.47Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=... [more]
ALEUL_ARATH1.102e-5682.64Thiol protease aleurain-like OS=Arabidopsis thalia... [more]
ORYC_ORYSJ2.078e-5580.17Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
CYSP3_SOLLC1.945e-5377.69Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]
ALEU_HORVU1.945e-5379.34Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]
CATH_RAT8.209e-3657.14Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1[more]
CATH_PIG1.829e-3554.62Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1[more]
CATH_BOVIN2.022e-3454.62Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1[more]
CATH_MOUSE2.641e-3454.62Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02N21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02N21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833040 ID=CF833040; Name=CF833040; organism=Citrus sinensis; type=EST; length=635bp
TTTTTTTTTTTTTTTTTGCATTGACAAAATATATATAACCTTTTTGGGGG
CCTAGTCACAATGACTGTTTACATGGACATAGATCTCAGAATTTATTTTG
AACATCAAGCAGCCATGCATTGCTATTGTAGATTATATGGACATTAATCT
CCGAATTTATTTCGTACATAAAGCCAACCATTCTGCTATCATTCTTGAGG
GAAATAATATAAGTTTTATGAGCAAATGACTTGCTGATAGCCAGATCCAA
CTATTTCTTCAGGAGCAGACTAAGCCACAACTGGGTATGATGCACAAGTT
GCAATACCACACATGTTCTTCCCCATCTCCATCTTAAAGTAGCCATGATC
GCCCCAGTTCTCTCCCCAAGAGTTCTTAATCAGCCAATATGGAACACCAT
CTTCAACTCCGTACCCAACAGCAACGACGGGATGGTTCACATCCATGGGA
GTATTTCCACATTTAGTGCTGCTGTAAACTCCACTCTTGTAAAATCGGAA
TCCATCTACTACTTCAAATGCCACACTCGCGGGGCGAACAAGACCAACTG
CATGCTGTAATTCATCTTCAGCACCCAAGGTAATGTTGACTGAGTCCAGG
ACTTGGACGCCAACATTTTCAGATGAGAATTTGCA
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