CF833045

Overview
NameCF833045
Unique NameCF833045
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length359
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2998 contig Csv1_Contig2998:702..1060. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833045 vs. ExPASy Swiss-Prot
Match: NSA2_DICDI (Ribosome biogenesis protein NSA2 homolog OS=Dictyostelium discoideum GN=nsa2 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.100e-37
Identity = 73/112 (65.18%), Postives = 93/112 (83.04%), Query Frame = 1
Query:   22 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRS*IAQKALGIKGKMFAKKRYAEKALMRKTLAMHEESSRRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKKKK 357
            MPQGD+IELH+KR G RLDH+E+ RKK AR  HKRS IAQK  G+K K++ KKRY+EKA M+KT+AMH+E + ++  DD+V+EGAVPAYLLDRE  +RAKVLSN +KQK+K+
Sbjct:    1 MPQGDHIELHQKRFGRRLDHYEKVRKKTARAAHKRSAIAQKVTGLKAKLYNKKRYSEKAEMKKTIAMHQERTNKKASDDKVKEGAVPAYLLDREGVSRAKVLSNMVKQKRKE 112          
BLAST of CF833045 vs. ExPASy Swiss-Prot
Match: NSA2_HUMAN (Ribosome biogenesis protein NSA2 homolog OS=Homo sapiens GN=TINP1 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.274e-34
Identity = 68/112 (60.71%), Postives = 92/112 (82.14%), Query Frame = 1
Query:   22 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRS*IAQKALGIKGKMFAKKRYAEKALMRKTLAMHEESSRRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKKKK 357
            MPQ +YIELHRKR GYRLD+ E+KRKKE+RE H+RS  A+K +G+K K++ K+R+AEK  M+KT+ MHE+ + ++K D++  +GAVPAYLLDRE  +RAKVLSN IKQK+K+
Sbjct:    1 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKE 112          
BLAST of CF833045 vs. ExPASy Swiss-Prot
Match: NSA2_RAT (Ribosome biogenesis protein NSA2 homolog OS=Rattus norvegicus GN=Tinp1 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 1.664e-34
Identity = 68/112 (60.71%), Postives = 91/112 (81.25%), Query Frame = 1
Query:   22 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRS*IAQKALGIKGKMFAKKRYAEKALMRKTLAMHEESSRRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKKKK 357
            MPQ +YIELHRKR GYRLD+ E+KRKKE RE H+RS  A+K +G+K K++ K+R+AEK  M+KT+ MHE+ + ++K D++  +GAVPAYLLDRE  +RAKVLSN IKQK+K+
Sbjct:    1 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKE 112          
BLAST of CF833045 vs. ExPASy Swiss-Prot
Match: NSA2_MOUSE (Ribosome biogenesis protein NSA2 homolog OS=Mus musculus GN=Tinp1 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.664e-34
Identity = 68/112 (60.71%), Postives = 91/112 (81.25%), Query Frame = 1
Query:   22 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRS*IAQKALGIKGKMFAKKRYAEKALMRKTLAMHEESSRRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKKKK 357
            MPQ +YIELHRKR GYRLD+ E+KRKKE RE H+RS  A+K +G+K K++ K+R+AEK  M+KT+ MHE+ + ++K D++  +GAVPAYLLDRE  +RAKVLSN IKQK+K+
Sbjct:    1 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKE 112          
BLAST of CF833045 vs. ExPASy Swiss-Prot
Match: NSA2_BOVIN (Ribosome biogenesis protein NSA2 homolog OS=Bos taurus GN=TINP1 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.664e-34
Identity = 68/112 (60.71%), Postives = 91/112 (81.25%), Query Frame = 1
Query:   22 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRS*IAQKALGIKGKMFAKKRYAEKALMRKTLAMHEESSRRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKKKK 357
            MPQ +YIELHRKR GYRLD+ E+KRKKE RE H+RS  A+K +G+K K++ K+R+AEK  M+KT+ MHE+ + ++K D++  +GAVPAYLLDRE  +RAKVLSN IKQK+K+
Sbjct:    1 MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKE 112          
BLAST of CF833045 vs. ExPASy Swiss-Prot
Match: NSA2_CANGA (Ribosome biogenesis protein NSA2 OS=Candida glabrata GN=NSA2 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.573e-27
Identity = 64/111 (57.66%), Postives = 77/111 (69.37%), Query Frame = 1
Query:   22 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRS*IAQKALGIKGKMFAKKRYAEKALMRKTLAMHEESSRRRKVDDEVQEG-AVPAYLLDRENTTRAKVLSNTIKQKK 351
            MPQ DYIE H K++G RLD+ ERKRK+EAREVHK +  AQK  G KGK FAKKRYAEK  MRK +  HE+S  +         G A+P YLLDRE T  AK +S++IKQK+
Sbjct:    1 MPQNDYIERHIKQHGRRLDYEERKRKREAREVHKVAEKAQKLTGWKGKQFAKKRYAEKVAMRKKIKAHEQSKAKGSSKPLADNGEALPTYLLDREQTNTAKAISSSIKQKR 111          
BLAST of CF833045 vs. ExPASy Swiss-Prot
Match: NSA2_ASHGO (Ribosome biogenesis protein NSA2 OS=Ashbya gossypii GN=NSA2 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.361e-27
Identity = 64/111 (57.66%), Postives = 76/111 (68.47%), Query Frame = 1
Query:   22 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRS*IAQKALGIKGKMFAKKRYAEKALMRKTLAMHEESSRRRKVDDEVQEG-AVPAYLLDRENTTRAKVLSNTIKQKK 351
            MPQ +YIE H K++G RLDH ERKRK+EARE HK S  AQK  G KGK FAKKRYAEK  MRK +  HE+S  +         G A+PAYLLDRE    AK +S++IKQK+
Sbjct:    1 MPQNEYIEQHIKKHGRRLDHEERKRKREAREAHKISEKAQKLTGWKGKQFAKKRYAEKVAMRKKIKAHEQSKLKGAAKPLEDSGEALPAYLLDREQANSAKAISSSIKQKR 111          
BLAST of CF833045 vs. ExPASy Swiss-Prot
Match: NSA2_YEAST (Ribosome biogenesis protein NSA2 OS=Saccharomyces cerevisiae GN=NSA2 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.668e-26
Identity = 64/111 (57.66%), Postives = 76/111 (68.47%), Query Frame = 1
Query:   22 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRS*IAQKALGIKGKMFAKKRYAEKALMRKTLAMHEESSRRRKVDDEVQEG-AVPAYLLDRENTTRAKVLSNTIKQKK 351
            MPQ DYIE H K++G RLDH ERKRK+EARE HK S  AQK  G KGK FAKKRYAEK  MRK +  HE+S  +        +G A+P YLLDRE    AK +S++IKQK+
Sbjct:    1 MPQNDYIERHIKQHGKRLDHEERKRKREARESHKISERAQKLTGWKGKQFAKKRYAEKVSMRKKIKAHEQSKVKGSSKPLDTDGDALPTYLLDREQNNTAKAISSSIKQKR 111          
BLAST of CF833045 vs. ExPASy Swiss-Prot
Match: NSA2_YEAS7 (Ribosome biogenesis protein NSA2 OS=Saccharomyces cerevisiae (strain YJM789) GN=NSA2 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.668e-26
Identity = 64/111 (57.66%), Postives = 76/111 (68.47%), Query Frame = 1
Query:   22 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRS*IAQKALGIKGKMFAKKRYAEKALMRKTLAMHEESSRRRKVDDEVQEG-AVPAYLLDRENTTRAKVLSNTIKQKK 351
            MPQ DYIE H K++G RLDH ERKRK+EARE HK S  AQK  G KGK FAKKRYAEK  MRK +  HE+S  +        +G A+P YLLDRE    AK +S++IKQK+
Sbjct:    1 MPQNDYIERHIKQHGKRLDHEERKRKREARESHKISERAQKLTGWKGKQFAKKRYAEKVSMRKKIKAHEQSKVKGSSKPLDTDGDALPTYLLDREQNNTAKAISSSIKQKR 111          
BLAST of CF833045 vs. ExPASy Swiss-Prot
Match: NSA2_VANPO (Ribosome biogenesis protein NSA2 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=NSA2 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.668e-26
Identity = 65/112 (58.04%), Postives = 79/112 (70.54%), Query Frame = 1
Query:   22 MPQGDYIELHRKRNGYRLDHFERKRKKEAREVHKRS*IAQKALGIKGKMFAKKRYAEKALMRKTLAMHEESSRR--RKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKK 351
            MPQ +YIE H K++G RLDH ERKRK+EARE HK S  AQK  G KGK FAKKRY+EK  MRK +  HE+S  +   K  DE  + A+P YLLDRE T  AK +S++IKQK+
Sbjct:    1 MPQNEYIEQHIKQHGRRLDHEERKRKREAREAHKISERAQKLTGWKGKQFAKKRYSEKVAMRKKIKAHEQSKVKGGSKPLDESGD-ALPTYLLDREQTNTAKAISSSIKQKR 111          
The following BLAST results are available for this feature:
BLAST of CF833045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
NSA2_DICDI2.100e-3765.18Ribosome biogenesis protein NSA2 homolog OS=Dictyo... [more]
NSA2_HUMAN1.274e-3460.71Ribosome biogenesis protein NSA2 homolog OS=Homo s... [more]
NSA2_RAT1.664e-3460.71Ribosome biogenesis protein NSA2 homolog OS=Rattus... [more]
NSA2_MOUSE1.664e-3460.71Ribosome biogenesis protein NSA2 homolog OS=Mus mu... [more]
NSA2_BOVIN1.664e-3460.71Ribosome biogenesis protein NSA2 homolog OS=Bos ta... [more]
NSA2_CANGA2.573e-2757.66Ribosome biogenesis protein NSA2 OS=Candida glabra... [more]
NSA2_ASHGO3.361e-2757.66Ribosome biogenesis protein NSA2 OS=Ashbya gossypi... [more]
NSA2_YEAST1.668e-2657.66Ribosome biogenesis protein NSA2 OS=Saccharomyces ... [more]
NSA2_YEAS71.668e-2657.66Ribosome biogenesis protein NSA2 OS=Saccharomyces ... [more]
NSA2_VANPO1.668e-2658.04Ribosome biogenesis protein NSA2 OS=Vanderwaltozym... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02N24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833045 ID=CF833045; Name=CF833045; organism=Citrus sinensis; type=EST; length=359bp
AGGCTACAAAGCCCTTACGAAATGCCGCAAGGAGATTACATAGAGCTTCA
CAGGAAGCGAAATGGCTACCGTCTCGATCACTTCGAGCGCAAGCGCAAGA
AGGAGGCGCGTGAAGTCCATAAGCGCTCCTAAATTGCCCAAAAGGCTTTG
GGTATTAAGGGCAAGATGTTTGCTAAAAAACGCTATGCTGAGAAGGCTCT
CATGAGGAAAACTTTGGCTATGCATGAAGAGTCATCACGTCGTAGAAAGG
TGGATGATGAAGTTCAAGAGGGTGCTGTTCCTGCTTATTTGCTTGATCGG
GAAAACACAACAAGAGCGAAGGTGCTTAGCAACACTATAAAGCAAAAAAA
AAAAAAAAA
back to top