CF833073

Overview
NameCF833073
Unique NameCF833073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6155 contig Csv1_Contig6155:197..952. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF833073 vs. ExPASy Swiss-Prot
Match: AIR12_ARATH (Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12 PE=1 SV=3)

HSP 1 Score: 169.474 bits (428), Expect = 1.807e-41
Identity = 88/159 (55.35%), Postives = 111/159 (69.81%), Query Frame = -1 
Query:  295 DSCLDLPTLSSYLHYTYNATNSSLSIAFVSTPASPDG-WVAWAINPTAKGMAGSQALIALKSSGSL--VVKTYNIISYSNLTESKLSFQTWDLKAESGASGTTVIYGKLKVPEKAETLNQVWQVGAQVANGHPMKHEFKQANLQAKGPLNLVK--KPGS 756
            DSC DLP L+SYLHYTYN++NSSLS+AFV+TP+  +G WVAWAINPT   MAGSQA +A +S G    VVKTYNI SYS+L E KL+F  W+L+AES + G   I+  +KVP  A+++NQVWQ+G  V NG P  H F   NL +   L+  +   PGS
Sbjct:   41 DSCEDLPVLNSYLHYTYNSSNSSLSVAFVATPSQANGGWVAWAINPTGTKMAGSQAFLAYRSGGGAAPVVKTYNISSYSSLVEGKLAFDFWNLRAESLSGGRIAIFTTVKVPAGADSVNQVWQIGGNVTNGRPGVHPFGPDNLGSHRVLSFTEDAAPGS 199
The following BLAST results are available for this feature:
BLAST of CF833073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AIR12_ARATH1.807e-4155.35Auxin-induced in root cultures protein 12 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02O18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02O18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833073 ID=CF833073; Name=CF833073; organism=Citrus sinensis; type=EST; length=756bp
TTTTTTTTTTTTTTGAAAACATAAATATATTAATTATTCGCCGAACATTA
AAACACAGAGATCTCCAATGGACAAAATGCGGATAATAACTACAGCAAAA
TACTAAAAATTAAAAAAAATAATAAAAAACAAAACTCAGAAAGTTTACAA
AGCGGAAACTGTTACAAGAAACAGAACCAAACCCATAAACAATCCAACAA
CATTAGCTCTGATCATCGACTGTCCGCCCCTGTCGGGAGAAGGAACGCCG
GGGCTACCGGGGGTACCGGGAGTCGGCGCCGACGCCGGCGTCAAACTACC
GGGCTTCTTGACCAAATTCAATGGCCCCTTGGCTTGAAGATTCGCCTGCT
TAAACTCATGTTTCATGGGATGTCCATTGGCCACCTGAGCACCCACCTGC
CACACTTGGTTCAACGTCTCCGCTTTCTCCGGAACCTTGAGCTTACCGTA
AATGACGGTGGTCCCGCTGGCACCGGATTCGGCCTTCAAGTCCCAGGTTT
GGAACGAGAGTTTTGATTCGGTGAGGTTGGAGTAGGAGATGATGTTGTAA
GTCTTGACGACGAGGGAGCCGCTGGATTTGAGGGCGATGAGGGCCTGGGA
TCCGGCCATGCCCTTAGCCGTCGGGTTGATGGCCCACGCGACCCAGCCGT
CGGGCGACGCCGGAGTCGACACGAAGGCGATGGAGAGAGACGAGTTCGTG
GCGTTGTACGTGTAGTGGAGGTAAGAGCTCAAAGTGGGGAGATCGAGGCA
ACTGTC
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