CF833090

Overview
NameCF833090
Unique NameCF833090
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2005 contig Csv1_Contig2005:18..585. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833090 vs. ExPASy Swiss-Prot
Match: ATG8F_ARATH (Autophagy-related protein 8f OS=Arabidopsis thaliana GN=ATG8F PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 6.803e-49
Identity = 97/121 (80.17%), Postives = 102/121 (84.30%), Query Frame = 1
Query:   73 MAKSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHIP 435
            MAKS FKQEHDL             YPDRIPVIVEKAE+SDIP IDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPP GA+MS++YEEKKD+DGFLYVTYSGENTFG   P
Sbjct:    1 MAKSSFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAEKSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLYVTYSGENTFGFGSP 121          
BLAST of CF833090 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSJ (Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.201e-45
Identity = 92/117 (78.63%), Postives = 97/117 (82.91%), Query Frame = 1
Query:   73 MAKSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 423
            MA+S FK EH L             YPDRIPVIVEKAERSDIP+IDKKKYLVPADLTVGQFVYV+RKRIKLSAEKAIFIFV N LPPT A+MSAIYEE KDEDGFLY+TYSGENTFG
Sbjct:    1 MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of CF833090 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSI (Autophagy-related protein 8C OS=Oryza sativa subsp. indica GN=ATG8C PE=3 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.201e-45
Identity = 92/117 (78.63%), Postives = 97/117 (82.91%), Query Frame = 1
Query:   73 MAKSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 423
            MA+S FK EH L             YPDRIPVIVEKAERSDIP+IDKKKYLVPADLTVGQFVYV+RKRIKLSAEKAIFIFV N LPPT A+MSAIYEE KDEDGFLY+TYSGENTFG
Sbjct:    1 MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of CF833090 vs. ExPASy Swiss-Prot
Match: ATG8C_ARATH (Autophagy-related protein 8c OS=Arabidopsis thaliana GN=ATG8C PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 5.960e-45
Identity = 89/117 (76.07%), Postives = 96/117 (82.05%), Query Frame = 1
Query:   73 MAKSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 423
            MA S FK EH L             YPDRIPVIVE+AERSD+PNIDKKKYLVPADLTVGQFVYV+RKRIKLSAEKAIF+FV N LPPT A+MSAIY+E KDEDGFLY+TYSGENTFG
Sbjct:    1 MANSSFKLEHPLERRQIESSRIREKYPDRIPVIVERAERSDVPNIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTAAMMSAIYDENKDEDGFLYMTYSGENTFG 117          
BLAST of CF833090 vs. ExPASy Swiss-Prot
Match: ATG8G_ARATH (Autophagy-related protein 8g OS=Arabidopsis thaliana GN=ATG8G PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.017e-44
Identity = 88/118 (74.58%), Postives = 98/118 (83.05%), Query Frame = 1
Query:   73 MAKSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 426
            M+   F+Q+HD              Y DR+PVIVEK+E+SDIPNIDKKKYLVPADLTVGQFVYVIRKRI+LSAEKAIFIFVDNVLPPTGA+MS IY+E K+EDGFLYVTYSGENTFGS
Sbjct:    1 MSNVSFRQDHDFEKRKAEALRIREKYSDRVPVIVEKSEKSDIPNIDKKKYLVPADLTVGQFVYVIRKRIQLSAEKAIFIFVDNVLPPTGAMMSTIYDENKEEDGFLYVTYSGENTFGS 118          
BLAST of CF833090 vs. ExPASy Swiss-Prot
Match: ATG8E_ARATH (Autophagy-related protein 8e OS=Arabidopsis thaliana GN=ATG8E PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.328e-44
Identity = 86/115 (74.78%), Postives = 97/115 (84.35%), Query Frame = 1
Query:   82 SYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 426
            S FK + D              YPDRIPVIVEKAE+S++PNIDKKKYLVP+DLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTG +MS++YE+KKDEDGFLY+TYSGENTFG+
Sbjct:    5 SIFKMDDDFEKRKAEAGRIREKYPDRIPVIVEKAEKSEVPNIDKKKYLVPSDLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGELMSSVYEDKKDEDGFLYITYSGENTFGA 119          
BLAST of CF833090 vs. ExPASy Swiss-Prot
Match: ATG8B_ORYSJ (Autophagy-related protein 8B OS=Oryza sativa subsp. japonica GN=ATG8B PE=3 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 3.863e-44
Identity = 90/117 (76.92%), Postives = 95/117 (81.20%), Query Frame = 1
Query:   73 MAKSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 423
            MAKS FK +H L             Y DRIPVIVEKAERSDIP+IDKKKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV N LPPT A+MSAIYEE KDEDGFLY+TYSGENTFG
Sbjct:    1 MAKSSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of CF833090 vs. ExPASy Swiss-Prot
Match: ATG8B_ORYSI (Autophagy-related protein 8B OS=Oryza sativa subsp. indica GN=ATG8B PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 3.863e-44
Identity = 90/117 (76.92%), Postives = 95/117 (81.20%), Query Frame = 1
Query:   73 MAKSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 423
            MAKS FK +H L             Y DRIPVIVEKAERSDIP+IDKKKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV N LPPT A+MSAIYEE KDEDGFLY+TYSGENTFG
Sbjct:    1 MAKSSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of CF833090 vs. ExPASy Swiss-Prot
Match: ATG8D_ARATH (Autophagy-related protein 8d OS=Arabidopsis thaliana GN=ATG8D PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.468e-43
Identity = 87/117 (74.36%), Postives = 96/117 (82.05%), Query Frame = 1
Query:   73 MAKSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 423
            MA S FK EH L             YPDRIPVIVE+AE+SD+P+ID+KKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV N+LPPT AIMSAIYEE KDEDGFLY++YSGENTFG
Sbjct:    1 MAISSFKHEHPLEKRQAEAARIREKYPDRIPVIVERAEKSDVPDIDRKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAIMSAIYEEHKDEDGFLYMSYSGENTFG 117          
BLAST of CF833090 vs. ExPASy Swiss-Prot
Match: ATG8A_ARATH (Autophagy-related protein 8a OS=Arabidopsis thaliana GN=ATG8A PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 7.286e-43
Identity = 87/118 (73.73%), Postives = 95/118 (80.51%), Query Frame = 1
Query:   73 MAKSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 426
            MAKS FK  + L             YPDRIPVIVEKA +SD+P+IDKKKYLVPADLTVGQFVYV+RKRIKL AEKAIF+FV N LPPT A+MSAIYEE KDEDGFLY+TYSGENTFGS
Sbjct:    1 MAKSSFKISNPLEARMSESSRIREKYPDRIPVIVEKAGQSDVPDIDKKKYLVPADLTVGQFVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFGS 118          
The following BLAST results are available for this feature:
BLAST of CF833090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ATG8F_ARATH6.803e-4980.17Autophagy-related protein 8f OS=Arabidopsis thalia... [more]
ATG8C_ORYSJ1.201e-4578.63Autophagy-related protein 8C OS=Oryza sativa subsp... [more]
ATG8C_ORYSI1.201e-4578.63Autophagy-related protein 8C OS=Oryza sativa subsp... [more]
ATG8C_ARATH5.960e-4576.07Autophagy-related protein 8c OS=Arabidopsis thalia... [more]
ATG8G_ARATH1.017e-4474.58Autophagy-related protein 8g OS=Arabidopsis thalia... [more]
ATG8E_ARATH1.328e-4474.78Autophagy-related protein 8e OS=Arabidopsis thalia... [more]
ATG8B_ORYSJ3.863e-4476.92Autophagy-related protein 8B OS=Oryza sativa subsp... [more]
ATG8B_ORYSI3.863e-4476.92Autophagy-related protein 8B OS=Oryza sativa subsp... [more]
ATG8D_ARATH1.468e-4374.36Autophagy-related protein 8d OS=Arabidopsis thalia... [more]
ATG8A_ARATH7.286e-4373.73Autophagy-related protein 8a OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833090 ID=CF833090; Name=CF833090; organism=Citrus sinensis; type=EST; length=568bp
GCCCCTTAGTTCTCTCGCTCTTTTCTGTTTTTTTTTCCTCTCGCTTCTTC
GCTTCGACTCTTTACAGGAGGAATGGCAAAGAGTTACTTCAAGCAAGAGC
ATGATCTTGAGAAGAGACGCGCAGAGGCTGCAAGGATTAGGGAGAAGTAC
CCTGACAGGATTCCGGTGATTGTGGAGAAGGCAGAGAGAAGTGACATACC
AAATATAGATAAGAAGAAGTATCTTGTTCCAGCTGACCTGACTGTAGGAC
AATTTGTCTATGTCATCCGTAAAAGGATCAAACTGAGTGCTGAAAAGGCG
ATATTTATTTTTGTGGATAATGTGCTCCCACCTACAGGTGCAATTATGTC
TGCCATATACGAAGAGAAAAAGGATGAAGATGGTTTTCTTTATGTGACTT
ACAGTGGGGAGAACACATTTGGAAGCCACATCCCAGTTTAGCCTTGTGAT
TATCTATCTGCTCATTGTGTGGTTTCTTGTGCGACCGCATTTTTATCTCA
ATTGTCATCCTTGCTTTCCGCTGAATATTCCTTTATCGGGCATATTTTAT
ATTTTATAAAGACATTGC
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