CF833093

Overview
NameCF833093
Unique NameCF833093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4812 contig Csv1_Contig4812:1..678. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CF833093 vs. ExPASy Swiss-Prot
Match: NLAL1_ARATH (Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis thaliana GN=At3g03920 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.196e-46
Identity = 87/103 (84.47%), Postives = 97/103 (94.17%), Query Frame = 2
Query:  200 EGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPKGQAQAG 508
            EGPP+EVVE+++F+HACEGDAVTKL+ EKIP FNAPIYL+NKTQIGKVDEIFGPINES FS+KMMEGIVATSYSPGDKF+IDP KLLPLARFLPQPKGQ+  G
Sbjct:   52 EGPPSEVVEVATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESLFSIKMMEGIVATSYSPGDKFFIDPYKLLPLARFLPQPKGQSTGG 154          
BLAST of CF833093 vs. ExPASy Swiss-Prot
Match: NLAL2_ARATH (H/ACA ribonucleoprotein complex subunit 1-like protein 2 OS=Arabidopsis thaliana GN=At5g18180 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.702e-43
Identity = 82/100 (82.00%), Postives = 92/100 (92.00%), Query Frame = 2
Query:  200 EGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPKGQA 499
            EGPP+EVVE+++FLHACEGDAV KL+N KIP FNAPIYLQNKTQIG+VDEIFGPINES FS+KM EGIVATSYS GDKF+I P KLLPL+RFLPQPKGQ+
Sbjct:   39 EGPPSEVVEVATFLHACEGDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESLFSIKMREGIVATSYSQGDKFFISPEKLLPLSRFLPQPKGQS 138          
BLAST of CF833093 vs. ExPASy Swiss-Prot
Match: GAR1_COCIM (H/ACA ribonucleoprotein complex subunit 1 OS=Coccidioides immitis GN=GAR1 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.980e-33
Identity = 63/96 (65.62%), Postives = 78/96 (81.25%), Query Frame = 2
Query:  203 GPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 490
            GPP  V+E+ SF+HACEG+ V +  N KIP+FNAPIYL+NKT +GKVDE+ GPIN+ YF++K  EGIVATS+ PGDKFYI   KLLPL +FLP+PK
Sbjct:   35 GPPTTVLEMGSFMHACEGEMVCESINPKIPYFNAPIYLENKTPVGKVDEVLGPINQVYFTIKPQEGIVATSFKPGDKFYIGGDKLLPLEKFLPKPK 130          
BLAST of CF833093 vs. ExPASy Swiss-Prot
Match: GAR1_NEOFI (H/ACA ribonucleoprotein complex subunit 1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=gar1 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.586e-33
Identity = 63/96 (65.62%), Postives = 79/96 (82.29%), Query Frame = 2
Query:  203 GPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 490
            GPPA+V+E+ +F+HACEG+ V +  N KIP+FNAPIYL+NKT IGKVDE+ GPIN+ YF++K  EGIVATS+ PGDK YI   KLLPL +FLP+PK
Sbjct:   35 GPPAQVLEMGTFMHACEGEMVCESVNPKIPYFNAPIYLENKTPIGKVDEVLGPINQVYFTIKPQEGIVATSFKPGDKVYIGGDKLLPLEKFLPKPK 130          
BLAST of CF833093 vs. ExPASy Swiss-Prot
Match: GAR1_KLULA (H/ACA ribonucleoprotein complex subunit 1 OS=Kluyveromyces lactis GN=GAR1 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.826e-33
Identity = 62/97 (63.92%), Postives = 78/97 (80.41%), Query Frame = 2
Query:  200 EGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 490
            +GPP  V+E+ +FLH CEGD V +  N KIP+FNAPIYL+NKTQ+GKVDEI GP+NE +F+VK  +G+ A S+S GDKFYI P KLLP+ RFLP+PK
Sbjct:   29 QGPPDSVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFFTVKCSDGVKAESFSEGDKFYIAPDKLLPIERFLPKPK 125          
BLAST of CF833093 vs. ExPASy Swiss-Prot
Match: GAR1_CANGA (H/ACA ribonucleoprotein complex subunit 1 OS=Candida glabrata GN=GAR1 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.826e-33
Identity = 60/97 (61.86%), Postives = 77/97 (79.38%), Query Frame = 2
Query:  200 EGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 490
            +GPP  V+E+  F+H CEGD V +  N K+P+FNAPIYL+NKTQ+GKVDEI GP+NE YF++K  EG+ ATS+  GDKFYI P KLLP+ RF+P+PK
Sbjct:   32 QGPPDTVLEMGEFMHPCEGDVVCRSINTKVPYFNAPIYLENKTQVGKVDEILGPLNEVYFTIKCGEGVQATSFKEGDKFYIAPDKLLPIERFIPKPK 128          
BLAST of CF833093 vs. ExPASy Swiss-Prot
Match: GAR1_CHAGB (H/ACA ribonucleoprotein complex subunit 1 OS=Chaetomium globosum GN=GAR1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.318e-32
Identity = 62/96 (64.58%), Postives = 76/96 (79.17%), Query Frame = 2
Query:  203 GPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 490
            GPPA V+E+  F+HACEG+ V + TN K+P FNAPIYL+NKT +GKVDE+ GPIN+ YF++K  EGI ATS+  GDKFYI   KLLPL RFLP+PK
Sbjct:   32 GPPATVLEMGKFIHACEGEMVIESTNPKVPHFNAPIYLENKTAVGKVDEVLGPINQVYFTIKPSEGIQATSFKYGDKFYIAGEKLLPLERFLPKPK 127          
BLAST of CF833093 vs. ExPASy Swiss-Prot
Match: GAR1_DEBHA (H/ACA ribonucleoprotein complex subunit 1 OS=Debaryomyces hansenii GN=GAR1 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.086e-31
Identity = 60/97 (61.86%), Postives = 77/97 (79.38%), Query Frame = 2
Query:  200 EGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 490
            +GPP  V+E+ +F+ +CEGD V +  N KIP+FNAPIYL+NKTQ+GKVDEI GP+NE +F++K  EG+ A S+  GDKFYI P KLLPL RFLP+PK
Sbjct:   23 QGPPDTVLEMGAFMQSCEGDIVCRSINVKIPYFNAPIYLENKTQVGKVDEILGPVNEVFFTIKPSEGVQADSFKDGDKFYIGPDKLLPLERFLPKPK 119          
BLAST of CF833093 vs. ExPASy Swiss-Prot
Match: GAR1_YEAST (H/ACA ribonucleoprotein complex subunit 1 OS=Saccharomyces cerevisiae GN=GAR1 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.419e-31
Identity = 60/97 (61.86%), Postives = 77/97 (79.38%), Query Frame = 2
Query:  200 EGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 490
            +GPP  V+E+ +FLH CEGD V +  N KIP+FNAPIYL+NKTQ+GKVDEI GP+NE +F++K  +G+ ATS+  GDKFYI   KLLP+ RFLP+PK
Sbjct:   31 QGPPDTVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFFTIKCGDGVQATSFKEGDKFYIAADKLLPIERFLPKPK 127          
BLAST of CF833093 vs. ExPASy Swiss-Prot
Match: GAR1_PICST (H/ACA ribonucleoprotein complex subunit 1 OS=Pichia stipitis GN=GAR1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.419e-31
Identity = 61/97 (62.89%), Postives = 77/97 (79.38%), Query Frame = 2
Query:  200 EGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 490
            +GPP  V+E+ +F+ ACEGD V +  N KIP+FNAPIYL+NKTQIGKVDEI GP+NE +F++K  EG+ A S+  GDKF+I P KLLPL RFLP+PK
Sbjct:   23 QGPPDTVLEMGAFMQACEGDIVCRSINVKIPYFNAPIYLENKTQIGKVDEILGPLNEVFFTIKPSEGVKADSFKEGDKFFIGPDKLLPLERFLPKPK 119          
The following BLAST results are available for this feature:
BLAST of CF833093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
NLAL1_ARATH1.196e-4684.47Putative H/ACA ribonucleoprotein complex subunit 1... [more]
NLAL2_ARATH4.702e-4382.00H/ACA ribonucleoprotein complex subunit 1-like pro... [more]
GAR1_COCIM1.980e-3365.63H/ACA ribonucleoprotein complex subunit 1 OS=Cocci... [more]
GAR1_NEOFI2.586e-3365.63H/ACA ribonucleoprotein complex subunit 1 OS=Neosa... [more]
GAR1_KLULA9.826e-3363.92H/ACA ribonucleoprotein complex subunit 1 OS=Kluyv... [more]
GAR1_CANGA9.826e-3361.86H/ACA ribonucleoprotein complex subunit 1 OS=Candi... [more]
GAR1_CHAGB8.318e-3264.58H/ACA ribonucleoprotein complex subunit 1 OS=Chaet... [more]
GAR1_DEBHA1.086e-3161.86H/ACA ribonucleoprotein complex subunit 1 OS=Debar... [more]
GAR1_YEAST1.419e-3161.86H/ACA ribonucleoprotein complex subunit 1 OS=Sacch... [more]
GAR1_PICST1.419e-3162.89H/ACA ribonucleoprotein complex subunit 1 OS=Pichi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833093 ID=CF833093; Name=CF833093; organism=Citrus sinensis; type=EST; length=687bp
GTCGCGCGCTTGCTTTACACTAAGCCCCTTGTCGTTTCTCCTAAAATCAA
CCCCCTTCCAGATTAAAAAAATGAGACCCCCGAGAGGAGGAGGCGGTTTC
AGGGGAGGAAGAGACGGCGGCCGTGGTGGAAGGGGCGGCGGCCGTTTTGG
TGGAGGCGGTCGTGGCGGTGGCGGTCGAGGTGGTTTTGGGTTCCGTGACG
AAGGACCTCCTGCCGAAGTTGTTGAGATATCTTCGTTTCTTCATGCGTGT
GAAGGTGATGCTGTGACAAAGCTCACCAATGAGAAAATACCTTTCTTTAA
TGCTCCAATCTATCTGCAAAACAAGACCCAGATAGGGAAAGTTGATGAAA
TTTTTGGTCCCATTAATGAATCTTATTTTTCGGTCAAAATGATGGAAGGT
ATTGTTGCAACTTCATATTCACCGGGTGATAAGTTCTACATTGACCCAAG
CAAGCTGTTGCCTCTTGCTAGATTTCTTCCGCAACCAAAGGGACAGGCAC
AAGCTGGTGCAAGAGGCGGCCGTGGAGGAGGCGGCTTTAGGGGCAGAGGA
GGTGGTAGAGGTGGAGGCCGTGGTCGTGGTGGAGGAGGAGGTGGCTTTAG
GGGCAGAGGTGGACCTCCTAGAGGTGGTCGTGGTGGTGGCTTTAAGGGCA
GAGGAAGGTTTTAGAACACCCTGTAGTTCTACTAGTG
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