CF833097

Overview
NameCF833097
Unique NameCF833097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4327 contig Csv1_Contig4327:213..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833097 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.570e-24
Identity = 52/116 (44.83%), Postives = 65/116 (56.03%), Query Frame = 3
Query:   12 MAVRVLLLSGILLFCVAVAEVSSTLKKEDDRDGVQHAGVGQLVVRGVTRRLMQDIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTKCP 359
            MA+   L + +LL  + + +V S    +   + +  A               + IDCGG C  RC L SRP LCNRACGTCC RC CVPPGT+GN E C  CY  +TTHGN+ KCP
Sbjct:    1 MAISKALFASLLLSLLLLEQVQSIQTDQVTSNAISEAAYSY-----------KKIDCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETC-PCYASLTTHGNKRKCP 104          
BLAST of CF833097 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 5.587e-22
Identity = 54/113 (47.79%), Postives = 62/113 (54.87%), Query Frame = 3
Query:   21 RVLLLSGILLFCVAVAEVSSTLKKEDDRDGVQHAGVGQLVVRGVTRRLMQDIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTKCP 359
            R  L+  ++LFC+   E+              HA     V  GV +     IDCGG CK RCS  SRPNLC RAC +CC RC CVPPGTAGN  LC  CY  +TT G R KCP
Sbjct:    5 RSTLVLLLILFCLTTFELHV------------HAAEDSQVGEGVVK-----IDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLC-PCYASITTRGGRLKCP 99          
BLAST of CF833097 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.621e-21
Identity = 47/81 (58.02%), Postives = 51/81 (62.96%), Query Frame = 3
Query:  117 HAGVGQLVVRGVTRRLMQDIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTKCP 359
            HA  G  V  GV +     IDCGG CK RCS  SR  LC RAC +CC RC CVPPGT+GN  LC  CY  +TTHG R KCP
Sbjct:   25 HAADGAKVGEGVVK-----IDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLC-PCYASITTHGGRLKCP 99          
BLAST of CF833097 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.347e-20
Identity = 46/116 (39.66%), Postives = 62/116 (53.45%), Query Frame = 3
Query:   12 MAVRVLLLSGILLFCVAVAEVSSTLKKEDDRDGVQHAGVGQLVVRGVTRRLMQDIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTKCP 359
            MA+   L++ +L+  + +  V + ++    ++G                   + IDCG  C  RC L  RP LC+RACGTCC RC CVPPGT GN + C  CY  +TTHG R KCP
Sbjct:    1 MAISKALIASLLISLLVLQLVQADVENSQKKNGYA-----------------KKIDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKC-QCYASLTTHGGRRKCP 98          
The following BLAST results are available for this feature:
BLAST of CF833097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SNAK2_SOLTU4.570e-2444.83Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
GASA3_ARATH5.587e-2247.79Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
GASA2_ARATH3.621e-2158.02Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
GASA1_ARATH2.347e-2039.66Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_03A09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833097 ID=CF833097; Name=CF833097; organism=Citrus sinensis; type=EST; length=515bp
TAGCAGCAGCGATGGCAGTACGCGTGCTTCTTCTGTCCGGGATTTTGCTC
TTCTGTGTTGCAGTTGCAGAGGTTTCATCTACTCTGAAGAAAGAAGATGA
TAGAGATGGAGTCCAGCATGCTGGTGTTGGCCAGCTTGTTGTGAGAGGTG
TAACCAGAAGGCTTATGCAAGACATAGACTGTGGAGGGTTGTGCAAACAG
AGGTGCAGCCTTCACTCAAGGCCAAACTTGTGTAACAGAGCATGCGGCAC
GTGTTGTGTAAGATGCAAGTGCGTGCCACCTGGCACCGCGGGTAACAGGG
AGCTTTGTGGGAGTTGCTATACTGACATGACTACCCATGGAAACAGGACT
AAGTGCCCATAGGCCCATGGGCTTCTGACTCCAGACTGGCCTGAACCCAT
CTGGGTTGTACATATCTTTTCTCTTGGAACTTTTGTAACCTAAGTGCGAC
TGTTTAAAAGTGGGCTATGGGCTGTCTAATAATAATTATAATTTGTGTGA
AAAAAAAAAAAAAAA
back to top