CF833103

Overview
NameCF833103
Unique NameCF833103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length530
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9946 contig Csv1_Contig9946:644..1173. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833103 vs. ExPASy Swiss-Prot
Match: DCS3_GOSAR ((+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum GN=CAD1-A PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.080e-14
Identity = 44/106 (41.51%), Postives = 59/106 (55.66%), Query Frame = 1
Query:   16 MDDIAGYKFEQKRGHNPSAVECYKNQHGVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPMLQRLLYFARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 330
            MDDIA +KF  +R  + SA+ECY  Q+GV+             +SWKD+NEE L PT +P P+L R L  AR    +Y +G D YTH     K  +  LL +P+ I
Sbjct:  451 MDDIAEHKFNHRREDDCSAIECYMKQYGVTAQEAYNEFNKHIESSWKDVNEEFLKPTEMPTPVLCRSLNLARVMDVLYREG-DGYTHVGKAAKGGITSLLIDPIQI 555          
BLAST of CF833103 vs. ExPASy Swiss-Prot
Match: HUMS_ARATH (Alpha-humulene/(-)-(E)-beta-caryophyllene synthase OS=Arabidopsis thaliana GN=TPS21 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.003e-13
Identity = 38/109 (34.86%), Postives = 56/109 (51.38%), Query Frame = 1
Query:    4 IGTLMDDIAGYKFEQKRGHNPSAVECYKNQHGVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPMLQRLLYFARSGHFIYDDGHDRYTHSLMMKRQVALLLTEPLAI 330
            I    DDI+ Y+FE KR H  + ++CY  Q GVS             ++WKD+N+EL+ P   P P+L R+L  +R     Y    D YT+  ++K  +  LL E + I
Sbjct:  440 ISRFTDDISSYEFEHKREHVATGIDCYMQQFGVSKERAVEVMGNIVSDAWKDLNQELMRPHVFPFPLLMRVLNLSRVIDVFY-RYQDAYTNPKLLKEHIVSLLIETIPI 547          
BLAST of CF833103 vs. ExPASy Swiss-Prot
Match: DCS1_GOSAR ((+)-delta-cadinene synthase isozyme XC1 OS=Gossypium arboreum PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.141e-12
Identity = 39/106 (36.79%), Postives = 60/106 (56.60%), Query Frame = 1
Query:   16 MDDIAGYKFEQKRGHNPSAVECYKNQHGVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPMLQRLLYFARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 330
            MDD+A +KF+ +R  + SA+ECY  ++GV+             ++WKD+N+E L PT +P  +L R L  AR    +Y +G D YT+     K  +  LL EP+A+
Sbjct:  450 MDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREG-DGYTYVGKAAKGGITSLLIEPIAL 554          
BLAST of CF833103 vs. ExPASy Swiss-Prot
Match: DCS2_GOSAR ((+)-delta-cadinene synthase isozyme XC14 OS=Gossypium arboreum PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.491e-12
Identity = 39/106 (36.79%), Postives = 60/106 (56.60%), Query Frame = 1
Query:   16 MDDIAGYKFEQKRGHNPSAVECYKNQHGVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPMLQRLLYFARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 330
            MDD+A +KF+ +R  + SA+ECY  ++GV+             ++WKD+N+E L PT +P  +L R L  AR    +Y +G D YT+     K  +  LL EP+A+
Sbjct:  450 MDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDVNKEFLKPTEMPTEVLNRSLNLARVMDVLYREG-DGYTYVGKAAKGGITSLLIEPVAL 554          
BLAST of CF833103 vs. ExPASy Swiss-Prot
Match: DCS4_GOSAR ((+)-delta-cadinene synthase isozyme C2 OS=Gossypium arboreum GN=CAD1-C2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.947e-12
Identity = 39/106 (36.79%), Postives = 59/106 (55.66%), Query Frame = 1
Query:   16 MDDIAGYKFEQKRGHNPSAVECYKNQHGVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPMLQRLLYFARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 330
            MDD+A +KF+ +R  + SA+ECY  ++GVS             ++WKD+N+E   PT +P  +L R L  AR    +Y +G D YT+     K  +  LL EP+A+
Sbjct:  450 MDDVAEHKFKHRREDDCSAIECYMEEYGVSAQEAYDVFNKHVESAWKDVNQEFQKPTEMPTEVLNRSLNLARVMDVLYREG-DGYTYVGKAAKGGITSLLIEPIAL 554          
BLAST of CF833103 vs. ExPASy Swiss-Prot
Match: CASS_RICCO (Casbene synthase, chloroplastic OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.661e-12
Identity = 38/106 (35.85%), Postives = 57/106 (53.77%), Query Frame = 1
Query:   13 LMDDIAGYKFEQKRGHNPSAVECYKNQHGVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPMLQRLLYFARSGHFIYDDGHDRYTHSLMMKRQVALLLTEPLAI 330
            L++D+  +  EQ+RGH  S ++CY NQHGVS             + WK+INEE +  + V +  L R++  AR     Y  G D YT S  +K+ V  L  +P++I
Sbjct:  497 LVNDLTSHVTEQQRGHVASCIDCYMNQHGVSKDEAVKILQKMATDCWKEINEECMRQSQVSVGHLMRIVNLARLTDVSYKYG-DGYTDSQQLKQFVKGLFVDPISI 601          
BLAST of CF833103 vs. ExPASy Swiss-Prot
Match: DCS1_GOSHI ((+)-delta-cadinene synthase OS=Gossypium hirsutum GN=CDN1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.648e-11
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = 1
Query:   16 MDDIAGYKFEQKRGHNPSAVECYKNQHGVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPMLQRLLYFARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 330
            MDD+  +KF+ +R  + SA+ECY  ++GV+             ++WKD+N+  L PT +P  +L R L  AR    +Y +G D YT+     K  +  LL EP+A+
Sbjct:  450 MDDVTEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDVNQGFLKPTEMPTEVLNRSLNLARVMDVLYREG-DGYTYVGKAAKGGITSLLIEPIAL 554          
The following BLAST results are available for this feature:
BLAST of CF833103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
DCS3_GOSAR2.080e-1441.51(+)-delta-cadinene synthase isozyme A OS=Gossypium... [more]
HUMS_ARATH3.003e-1334.86Alpha-humulene/(-)-(E)-beta-caryophyllene synthase... [more]
DCS1_GOSAR1.141e-1236.79(+)-delta-cadinene synthase isozyme XC1 OS=Gossypi... [more]
DCS2_GOSAR1.491e-1236.79(+)-delta-cadinene synthase isozyme XC14 OS=Gossyp... [more]
DCS4_GOSAR1.947e-1236.79(+)-delta-cadinene synthase isozyme C2 OS=Gossypiu... [more]
CASS_RICCO9.661e-1235.85Casbene synthase, chloroplastic OS=Ricinus communi... [more]
DCS1_GOSHI1.648e-1134.91(+)-delta-cadinene synthase OS=Gossypium hirsutum ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_03A12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833103 ID=CF833103; Name=CF833103; organism=Citrus sinensis; type=EST; length=530bp
ACCATTGGCACGCTCATGGATGACATAGCAGGTTATAAGTTTGAGCAGAA
GAGAGGACATAATCCCTCAGCAGTTGAGTGCTACAAGAATCAACATGGCG
TCTCCGAGGAAGAGGCAGTTAAAGAGTTGTTGTTAGAAGTTGCTAACAGT
TGGAAAGATATAAATGAGGAGCTTCTCAACCCAACGACTGTCCCGTTACC
TATGCTTCAACGGCTTCTTTATTTCGCACGTTCAGGCCATTTTATCTACG
ACGATGGTCATGATCGCTACACCCATTCATTGATGATGAAACGCCAAGTT
GCCTTGTTGCTGACGGAACCCCTTGCGATCTGAAGATTAACGTCATGCTA
TTGATTTTCCATCGGATATATTTGAGCAGTTGTAATAAATGAAGGTCGCG
CTGGCTATTTAGCTAGCTACTCATGCCTGGCTAATAAATGTGTCGCCAAA
TAATATGGTTTCAAATTGTGGTCCTTTTAGTTAAAAAATTAATAATAAAA
TATTTTTCTTCTANAAAAAAAAAAAAAAAA
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