CF833106

Overview
NameCF833106
Unique NameCF833106
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7102 contig Csv1_Contig7102:114..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833106 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 5.322e-25
Identity = 53/131 (40.46%), Postives = 72/131 (54.96%), Query Frame = 1
Query:  265 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRXAIPIYWNYNYGATGEALKADL 657
            QF++    RN     A GF+ Y +FITA   +   GFGTTG    + KE+ AF      +T+ G+  A  GP +WG C+  E +P+  YC+ S   T+PC  G  YYGR  + + WNYNYG  G A+  DL
Sbjct:   94 QFDDMLKHRNDAACPARGFYTYNAFITAAKSFP--GFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPS--ATWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVDL 220          
BLAST of CF833106 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.078e-25
Identity = 54/130 (41.54%), Postives = 74/130 (56.92%), Query Frame = 1
Query:  268 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRXAIPIYWNYNYGATGEALKADL 657
            F+     RN P   A GF+ Y +F+ A   +    FGTTG+   + +E+ AFL     +T+ G+  A  GP AWG C+  E +PS +YC  S +  YPC PG  YYGR  + + WNYNYG  GEAL+ +L
Sbjct:   11 FDQMLKHRNNPACPAKGFYTYDAFLAAAKSFP--SFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPR--YPCAPGKSYYGRGPLQLSWNYNYGPCGEALRVNL 136          
BLAST of CF833106 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.078e-25
Identity = 59/142 (41.55%), Postives = 77/142 (54.23%), Query Frame = 1
Query:  232 NETISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRXAIPIYWNYNYGATGEALKADL 657
            ++ IS       FE     RN     A GF+ Y++FITAT  +    FGTTG    + KEI AFLA    +T+ G+  A  GP +WG CYN E      YC  S +  +PC PG +Y+GR  I I +NYNYGA G A+  +L
Sbjct:    2 SQNISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFA--AFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQ--WPCAPGKKYFGRGPIQISYNYNYGAAGSAIGVNL 139          
BLAST of CF833106 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.641e-24
Identity = 53/131 (40.46%), Postives = 72/131 (54.96%), Query Frame = 1
Query:  265 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRXAIPIYWNYNYGATGEALKADL 657
            QF++    RN     A GF+ Y +FI A   +   GFGTTG    + KEI AF      +T+ G+  A  GP +WG C+  E +PS +YC  S +  +PC  G  YYGR  + + WNYNYG  G A+ +DL
Sbjct:   79 QFDDMLKHRNDNACPARGFYTYDAFINAAKSFP--GFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAE--WPCASGKSYYGRGPMQLSWNYNYGQCGRAIGSDL 205          
BLAST of CF833106 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.920e-23
Identity = 52/129 (40.31%), Postives = 74/129 (57.36%), Query Frame = 1
Query:  268 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRXAIPIYWNYNYGATGEALKAD 654
            + + F  ++     A GF+ Y SF+ A  ++    F  TG    + +E+ AFLA +  +T+ G+  A  GP AWGLCY  E++P  SYCD + K  +PC PG  Y+GR  I I WN+NYG  G+AL  D
Sbjct:   58 YASLFLHKDDAACPARGFYTYASFVRAATRFPR--FAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDK-QWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFD 183          
BLAST of CF833106 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.814e-23
Identity = 55/131 (41.98%), Postives = 70/131 (53.44%), Query Frame = 1
Query:  268 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYG-VATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRXAIPIYWNYNYGATGEALKADL 657
            F      RN     A GF+ Y +FI A   +    F TTG +  + +EI AFLA    +T+ G G  A  GP AWG CYN E++P  SYC     Y  PC PG +Y+GR  + + WNYNYG  G A+  DL
Sbjct:   61 FNQMLLHRNDGACPARGFYTYDAFIAAARSFP--AFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYCASDPNY--PCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDL 187          
BLAST of CF833106 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.814e-23
Identity = 55/131 (41.98%), Postives = 70/131 (53.44%), Query Frame = 1
Query:  268 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYG-VATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRXAIPIYWNYNYGATGEALKADL 657
            F      RN     A GF+ Y +FI A   +    F TTG +  + +EI AFLA    +T+ G G  A  GP AWG CYN E++P  SYC     Y  PC PG +Y+GR  + + WNYNYG  G A+  DL
Sbjct:   83 FNQMLLHRNDGACPARGFYTYDAFIAAARSFP--AFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYCASDPNY--PCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDL 209          
BLAST of CF833106 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.449e-22
Identity = 54/130 (41.54%), Postives = 70/130 (53.85%), Query Frame = 1
Query:  268 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRXAIPIYWNYNYGATGEALKADL 657
            F+     RN     A GF+ Y +FI A   Y    FG TG    + +EI AFL     +T+ G+  A  GP AWG C+  E +PS +YC  + ++  PC PG +YYGR  I I WNYNYG  G A+  DL
Sbjct:   85 FDQMLKHRNDGACPAKGFYTYDAFIAAAKAYP--SFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPS-TYCSATPQF--PCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDL 209          
BLAST of CF833106 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.893e-22
Identity = 54/130 (41.54%), Postives = 70/130 (53.85%), Query Frame = 1
Query:  268 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRXAIPIYWNYNYGATGEALKADL 657
            F+     RN     A GF+ Y +FI A   Y    FG TG    + +EI AFL     +T+ G+  A  GP AWG C+  E +PS +YC  + ++  PC PG +YYGR  I I WNYNYG  G A+  DL
Sbjct:   84 FDQVLKHRNDGACPAKGFYTYDAFIAAAKAYP--SFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPS-AYCSATPQF--PCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDL 208          
BLAST of CF833106 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.893e-22
Identity = 53/140 (37.86%), Postives = 72/140 (51.43%), Query Frame = 1
Query:  238 TISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRXAIPIYWNYNYGATGEALKADL 657
            ++S      QF+     RN     A GF+ Y +F+ A   +   GFGTTG+   + +E+ AFLA    +T+ G+  A  G  AWG C+  E   S  YC  S +  +PC PG  YYGR  I +  NYNYG  G A+  DL
Sbjct:   24 SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFP--GFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQ--WPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDL 159          
The following BLAST results are available for this feature:
BLAST of CF833106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
CHIB_ARATH5.322e-2540.46Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHIT_CARPA9.078e-2541.54Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHID_SOLLC9.078e-2541.55Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI2_BRANA2.641e-2440.46Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI10_ORYSJ2.920e-2340.31Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI2_GOSHI3.814e-2341.98Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI3.814e-2341.98Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHIT_PHAVU1.449e-2241.54Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI5_PHAVU1.893e-2241.54Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_HORVU1.893e-2237.8626 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A14_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833106 ID=CF833106; Name=CF833106; organism=Citrus sinensis; type=EST; length=659bp
CTCATCTTCCCCCCATTGAATCTCGAAACAACAGGTAGATCTGGTGAGAA
CGAGAAAATGAAGATGAAGAATGGCAGTGTGGCAATGACACTGACAGTGG
CACTAGTACTGGCACTGGCAGTGAGTTTGGCAAATGGAGATGAATCAGAG
AAGGTGATAGTGAAGAAGTTGAAGGGGAAAAAAGTTTGCATAAAAGGGTG
GGAGTGCCCAACATGGTCGAAATTCTGCTGTAACGAGACGATATCAGACT
ATTTCCAGGTTTACCAGTTTGAGAATTTCTTCTCGAAAAGGAACACGCCG
GTGGCACATGCCGTGGGATTCTGGGATTATCAGTCTTTCATTACTGCCAC
CGTCAAATATCAGCCCCTCGGCTTCGGTACCACCGGTACTAAGCTTGATA
AGATGAAGGAGATTTGCGCTTTTCTTGCCCACGTGGGCTGCAAGACCTCT
TGTGGATATGGAGTGGCCACTGGAGGACCATTGGCCTGGGGACTTTGCTA
CAACCATGAAATGAGCCCCAGTCAGTCATATTGTGATGATTCCTACAAAT
ACACATATCCCTGCACCCCTGGAGCTGAGTACTATGGCCGANGTGCTATA
CCTATATACTGGAACTATAACTATGGAGCCACTGGGGAAGCATTGAAGGC
AGATCTGTT
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