CF833107

Overview
NameCF833107
Unique NameCF833107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11296 contig Csv1_Contig11296:465..1248. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833107 vs. ExPASy Swiss-Prot
Match: GAE1_ARATH (UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1)

HSP 1 Score: 358.607 bits (919), Expect = 2.213e-98
Identity = 171/199 (85.93%), Postives = 181/199 (90.95%), Query Frame = -1
Query:  187 VPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXKRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPPTDLQTGLKKFVRWYLSYYGYN 783
            VPFSE+DRTDQPASLYAATKKAGEEI HTYNHIYGL+ITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPIT+YRGKN VDLARDFTYIDDIVKGCLGSLD           KRG APYRIFNLGNTSPVTVP LV+ILE+HLKVKAK+N +EMPGNGDVPFTHANISSA+ EFGY+P TDL+TGLKKFVRWYLSYYGYN
Sbjct:  224 VPFSESDRTDQPASLYAATKKAGEEITHTYNHIYGLAITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITIYRGKNRVDLARDFTYIDDIVKGCLGSLDSSGKSTGSGGKKRGAAPYRIFNLGNTSPVTVPILVDILEKHLKVKAKRNFVEMPGNGDVPFTHANISSARNEFGYKPTTDLETGLKKFVRWYLSYYGYN 422          
BLAST of CF833107 vs. ExPASy Swiss-Prot
Match: GAE2_ARATH (UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 4.786e-85
Identity = 154/204 (75.49%), Postives = 172/204 (84.31%), Query Frame = -1
Query:  172 VPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXKRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPPTDLQTGLKKFVRWYLSYYGYNRGKRV 783
            VPFSE DRTDQPASLYAATKKAGEEIAHTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FTR+IL+GK I+++ G NH  +ARDFTYIDDIVKGCLG+LD           KRG A  R+FNLGNTSPV V  LV+ILER LKVKAK+N++++P NGDVPFTHANISSAQ+EFGY+P TDLQTGLKKFVRWYL YY    GK+V
Sbjct:  228 VPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIFEGANHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLVSILERLLKVKAKRNMMKLPRNGDVPFTHANISSAQREFGYKPSTDLQTGLKKFVRWYLGYYKQG-GKKV 430          
BLAST of CF833107 vs. ExPASy Swiss-Prot
Match: GAE4_ARATH (UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 5.292e-84
Identity = 150/196 (76.53%), Postives = 165/196 (84.18%), Query Frame = -1
Query:  196 VPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXKRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPPTDLQTGLKKFVRWYLSYY 783
            VPFSE D+TDQPASLYAATKKAGEEIAHTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FT++IL+GK I+++   NH  +ARDFTYIDDIVKGCL +LD           KRGPA  R+FNLGNTSPV V  LV ILER LKVKAKKN+I+MP NGDVPFTHANIS AQ+E GY+P TDLQTGLKKFVRWYLSYY
Sbjct:  233 VPFSEKDKTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKSISIFESANHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGPAQLRVFNLGNTSPVPVSDLVRILERQLKVKAKKNLIKMPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYY 428          
BLAST of CF833107 vs. ExPASy Swiss-Prot
Match: GAE3_ARATH (UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 3.430e-83
Identity = 151/203 (74.38%), Postives = 168/203 (82.76%), Query Frame = -1
Query:  175 VPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXKRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPPTDLQTGLKKFVRWYLSYYGYNRGKR 783
            VPFSE DRTDQPASLYAATKKAGEEIAHTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FTR+IL+GK I+++ G NH  +ARDFTYIDDIVKGCLG+LD           KRG A  R+FNLGNTSPV V  LV ILER LKVKAK+N++++P NGDV FTHANISSAQ+E GY+P TDLQTGLKKF RWYL Y  YN GK+
Sbjct:  227 VPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIFEGVNHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLVTILERLLKVKAKRNIMKLPRNGDVQFTHANISSAQRELGYKPTTDLQTGLKKFARWYLGY--YNGGKK 427          
BLAST of CF833107 vs. ExPASy Swiss-Prot
Match: GAE5_ARATH (UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana GN=GAE5 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.153e-77
Identity = 139/202 (68.81%), Postives = 163/202 (80.69%), Query Frame = -1
Query:  178 VPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXKRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPPTDLQTGLKKFVRWYLSYYGYNRGK 783
            VPFSE DRTDQPASLYAATKKAGE IAHTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FT++IL+GK ITV+   +   +ARDFTYIDDIVKGCLG+LD           K+GPA +RI+NLGNTSPV V KLV ILE+ LK+KAKK ++ +P NGDV FTHANI+ AQ E GY+P  DL+TGLKKFV+WY+ +Y  ++ K
Sbjct:  232 VPFSEKDRTDQPASLYAATKKAGEGIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKTITVFESPDKGSVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKGPAMFRIYNLGNTSPVPVTKLVTILEKLLKMKAKKKIMPLPRNGDVEFTHANITLAQAELGYKPAVDLETGLKKFVKWYMGFYTGSKKK 433          
BLAST of CF833107 vs. ExPASy Swiss-Prot
Match: GAE6_ARATH (UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 1.069e-76
Identity = 136/196 (69.39%), Postives = 161/196 (82.14%), Query Frame = -1
Query:  193 PFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXKRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPPTDLQTGLKKFVRWYLSYYG 780
            PFSE  RTDQPASLYAATKKAGEEIAHTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FT++IL GK I +YR +++ ++ARDFTYIDDIVKGC+G+LD           KRG A  R++NLGNTSPV V +LV+ILE  L  KAKK++I+MP NGDVP+THAN+S A K+FGY+P TDL  GL+KFV+WY+ YYG
Sbjct:  249 PFSEEHRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILHGKSIDIYRTQDNQEVARDFTYIDDIVKGCVGALDTAEKSTGSGGKKRGQAQLRVYNLGNTSPVPVGRLVSILEGLLGTKAKKHLIKMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVGYYG 444          
BLAST of CF833107 vs. ExPASy Swiss-Prot
Match: CAPI_STAAU (Protein capI OS=Staphylococcus aureus GN=capI PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.353e-46
Identity = 94/201 (46.77%), Postives = 127/201 (63.18%), Query Frame = -1
Query:  196 PFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXKRGP------APYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPPTDLQTGLKKFVRWYLSYY 780
            PFS +D  D P SLYAATKK+ E +AHTY+H+Y L  TGLRFFTVYGPWGRPDMA F FT+ I+  + I VY   NH ++ RDFTY+DDIV+  +  L               P      APY+++N+GN SPV + + V  +E  L  +A+KN +++   GDVP T+AN+    ++  ++P T +Q G+ KFV WYL YY
Sbjct:  137 PFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVY---NHGNMMRDFTYVDDIVE-AISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQ-PGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY 332          
BLAST of CF833107 vs. ExPASy Swiss-Prot
Match: YCL2_ECO11 (Uncharacterized 37.6 kDa protein in cld 5'region OS=Escherichia coli O111:H- PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.274e-45
Identity = 95/201 (47.26%), Postives = 126/201 (62.69%), Query Frame = -1
Query:  196 VPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXKRGP-----APYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPPTDLQTGLKKFVRWYLSYY 783
            +PFS  D  D P SLYAATKKA E +AHTY+H+YGL  TGLRFFTVYGPWGRPDMA F FT+ +L+GK I VY   N+  + RDFTYIDDI +  +   D           + G      APYR++N+GN+SPV +   +  LE  L ++AKKN++ +   GDV  T A+  +  +  G+ P T ++ G+K FV WY  +Y
Sbjct:  136 MPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVY---NYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQ-PGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFY 332          
BLAST of CF833107 vs. ExPASy Swiss-Prot
Match: Y1055_METJA (Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii GN=MJ1055 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.839e-45
Identity = 90/193 (46.63%), Postives = 128/193 (66.32%), Query Frame = -1
Query:  205 VPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXKRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPPTDLQTGLKKFVRWYL 783
            +PFSE DR D+P SLYA+TK++ E +AH Y+H+YG+ + GLRFFTVYG +GRPDMAYF F +NIL GK I VY   N+ ++ RDFTYI D+V G L ++             +    Y IFNLGN+ PV +   + ++E++L  KAKK  + M  +GDV  T+A++S ++K  GY+P   ++ GLK+F  W+L
Sbjct:  142 IPFSEDDRVDKPISLYASTKRSNELMAHVYHHLYGIKMIGLRFFTVYGEYGRPDMAYFKFAKNILLGKEIEVY---NYGNMERDFTYISDVVDGILRAI-------------KKDFDYEIFNLGNSKPVKLMYFIELIEKYLNKKAKKKFLPMQ-DGDVLRTYADLSKSEKLLGYKPKVTIEEGLKRFCNWFL 317          
BLAST of CF833107 vs. ExPASy Swiss-Prot
Match: LPSL_RHIME (UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti GN=lspL PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 7.748e-35
Identity = 81/202 (40.10%), Postives = 115/202 (56.93%), Query Frame = -1
Query:  196 VPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCL------GSLDXXXXXXXXXXXKRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPPTDLQTGLKKFVRWYLSYY 783
            +PF+EADR D+P +LYAATKK+ E +AH+Y H+Y +  T  RFFTVYGPWGRPDMA F F   I  G+PI +Y G+    ++RDFTYIDD+V+  +       S +               AP+R+ N G   PV +   V  +E+ +   A  N++ M   GDVP T A+    +   G++P   ++ G+ +FV WY   Y
Sbjct:  137 IPFAEADRADEPMTLYAATKKSMELMAHSYAHLYKVPTTSFRFFTVYGPWGRPDMALFKFVDAIHNGRPIDIY-GEGR--MSRDFTYIDDLVESIVRLSHVPPSEENRVAPEKATDTLSRHAPFRVVNTGGGQPVELMTFVETVEKAVGRPAIHNMLPMQ-QGDVPRTFASPDLLEALTGFKPSVSVEEGVARFVEWYDQNY 334          
The following BLAST results are available for this feature:
BLAST of CF833107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
GAE1_ARATH2.213e-9885.93UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thali... [more]
GAE2_ARATH4.786e-8575.49UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thali... [more]
GAE4_ARATH5.292e-8476.53UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thali... [more]
GAE3_ARATH3.430e-8374.38UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thali... [more]
GAE5_ARATH2.153e-7768.81UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thali... [more]
GAE6_ARATH1.069e-7669.39UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thali... [more]
CAPI_STAAU3.353e-4646.77Protein capI OS=Staphylococcus aureus GN=capI PE=3... [more]
YCL2_ECO111.274e-4547.26Uncharacterized 37.6 kDa protein in cld 5'region O... [more]
Y1055_METJA2.839e-4546.63Uncharacterized protein MJ1055 OS=Methanocaldococc... [more]
LPSL_RHIME7.748e-3540.10UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833107 ID=CF833107; Name=CF833107; organism=Citrus sinensis; type=EST; length=783bp
TTTTTTTTTTTTTTTTCCCTTACAACGTTTTCTGTTCCTTTCGTTTCTTT
TAAGGAAAAAAACAAAAAAAAAAAACCCTCTAATCCCGCACCTCCCACGG
CGCGAAAACCCAAAAAAAAAAGAAAAAAAGAAGGTAAAACGCAAAAAACA
TAAAGGAAAAAAAAATTAATTTACACGTTTGCCACGATTATAGCCGTAAT
ATGAGAGATACCATCTAACAAATTTTTTCAAGCCGGTTTGCAAATCCGTC
GGGGGCCTGTACCCGAACTCCTTCTGGGCCGAACTGATATTCGCATGCGT
GAACGGGACGTCGCCGTTTCCAGGCATTTCGATTACATTCTTCTTGGCTT
TTACCTTCAGGTGTCTCTCCAATATATTCACCAGCTTAGGTACCGTGACC
GGTGACGTGTTCCCCAAATTAAAGATCCGGTACGGTGCTGGGCCCCGCTT
CTTTCCGCCCGACCCGGTACTCTTACCCGAGGTATCCAGCGAACCTAAAC
AACCCTTCACGATATCGTCAATGTAAGTAAAATCTCGTGCCAAGTCGACG
TGATTCTTCCCACGATAAACCGTGATTGGTTTGCCTTGGAGAATATTTCT
CGTGAACGAGAAGTAAGCCATATCGGGTCGGCCCCAGGGTCCGTACACGG
TGAAAAACCTCAGCCCGGTAATTGAGAGGCCGTAAATGTGATTGTAGGTG
TGAGCAATTTCTTCACCGGCCTTTTTGGTAGCCGCGTAAAGACTAGCTGG
CTGGTCCGTCCGATCAGCCTCGGAGAATGGGAC
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