CF833118

Overview
NameCF833118
Unique NameCF833118
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833118 vs. ExPASy Swiss-Prot
Match: CATB3_GIALA (Cathepsin B-like CP3 OS=Giardia lamblia GN=CP3 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.422e-17
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = -2
Query:  314 RFLGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGF 487
            R  GGHAV ++G+GT DDG DYWI+ N W   WG DGYF+I R +NECGIEE V+ GF
Sbjct:  239 RVEGGHAVDMVGYGTDDDGVDYWIIKNSWGPDWGEDGYFRIIRMTNECGIEEQVIGGF 296          
BLAST of CF833118 vs. ExPASy Swiss-Prot
Match: CPR6_CAEEL (Cathepsin B-like cysteine proteinase 6 OS=Caenorhabditis elegans GN=cpr-6 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.958e-17
Identity = 38/65 (58.46%), Postives = 44/65 (67.69%), Query Frame = -2
Query:  284 GGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGFPSSKNLVKEI 478
            GGHAVKLIGWG  DDG  YW +AN WN  WG DG+F+I RG +ECGIE  VV G P   +L   +
Sbjct:  303 GGHAVKLIGWGI-DDGIPYWTVANSWNTDWGEDGFFRILRGVDECGIESGVVGGIPKLNSLTSRL 366          
BLAST of CF833118 vs. ExPASy Swiss-Prot
Match: CPR4_CAEEL (Cathepsin B-like cysteine proteinase 4 OS=Caenorhabditis elegans GN=cpr-4 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.958e-17
Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = -2
Query:  311 LGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGFP 481
            LGGHA++++GWGT D+G  YW++AN WN +WG +GYF+I RG+NECGIE  VV G P
Sbjct:  278 LGGHAIRILGWGT-DNGTPYWLVANSWNVNWGENGYFRIIRGTNECGIEHAVVGGVP 333          
BLAST of CF833118 vs. ExPASy Swiss-Prot
Match: CPR5_CAEEL (Cathepsin B-like cysteine proteinase 5 OS=Caenorhabditis elegans GN=cpr-5 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.218e-16
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = -2
Query:  311 LGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGFP 481
            LGGHAVK++GWG  D+G  YW++AN WN +WG  GYF+I RG NECGIE   VAG P
Sbjct:  283 LGGHAVKILGWGV-DNGTPYWLVANSWNVAWGEKGYFRIIRGLNECGIEHSAVAGIP 338          
BLAST of CF833118 vs. ExPASy Swiss-Prot
Match: CATB2_GIALA (Cathepsin B-like CP2 OS=Giardia lamblia GN=CP2 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.784e-16
Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = -2
Query:  314 GGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGF 478
            GGHAV+++G+GT DDG DYWI+ N W   WG DGYF++ RG N+C IEE   AGF
Sbjct:  243 GGHAVEMVGYGTDDDGVDYWIIKNSWGPDWGEDGYFRMIRGINDCSIEEQAYAGF 297          
BLAST of CF833118 vs. ExPASy Swiss-Prot
Match: CPR3_CAEEL (Cathepsin B-like cysteine proteinase 3 OS=Caenorhabditis elegans GN=cpr-3 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.453e-15
Identity = 38/76 (50.00%), Postives = 54/76 (71.05%), Query Frame = -2
Query:  260 RFLGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGFPSSKNLVKEITSADMFED 487
            + +GGHAVK+IGWG  ++G DYW++AN W  S+G  G+FKI+RG+NEC IE +VVAG      + K  T ++ +ED
Sbjct:  279 KLVGGHAVKIIGWGV-ENGVDYWLIANSWGTSFGEKGFFKIRRGTNECQIEGNVVAG------IAKLGTHSETYED 347          
BLAST of CF833118 vs. ExPASy Swiss-Prot
Match: CPR1_CAEEL (Gut-specific cysteine proteinase OS=Caenorhabditis elegans GN=cpr-1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.453e-15
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = -2
Query:  317 RFLGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAG 487
            ++LGGHA+K+IGWGT + G  YW++AN W  +WG  G+FKI RG ++CGIE  VVAG
Sbjct:  270 KYLGGHAIKIIGWGT-ESGSPYWLVANSWGVNWGESGFFKIYRGDDQCGIESAVVAG 325          
BLAST of CF833118 vs. ExPASy Swiss-Prot
Match: CATB_RAT (Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.453e-15
Identity = 31/60 (51.67%), Postives = 46/60 (76.67%), Query Frame = -2
Query:  302 LGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGFPSSK 481
            +GGHA++++GWG  ++G  YW++AN WN  WG +G+FKI RG N CGIE ++VAG P ++
Sbjct:  275 MGGHAIRILGWGI-ENGVPYWLVANSWNVDWGDNGFFKILRGENHCGIESEIVAGIPRTQ 333          
BLAST of CF833118 vs. ExPASy Swiss-Prot
Match: CATB_PONAB (Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.453e-15
Identity = 32/66 (48.48%), Postives = 48/66 (72.73%), Query Frame = -2
Query:  284 LGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGFPSSKNLVKEI 481
            +GGHA++++GWG  ++G  YW++AN WN  WG +G+FKI RG + CGIE +VVAG P +    ++I
Sbjct:  275 MGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI 339          
BLAST of CF833118 vs. ExPASy Swiss-Prot
Match: CATB_MACFA (Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.453e-15
Identity = 32/66 (48.48%), Postives = 48/66 (72.73%), Query Frame = -2
Query:  284 LGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGFPSSKNLVKEI 481
            +GGHA++++GWG  ++G  YW++AN WN  WG +G+FKI RG + CGIE +VVAG P +    ++I
Sbjct:  275 MGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI 339          
The following BLAST results are available for this feature:
BLAST of CF833118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
CATB3_GIALA3.422e-1762.07Cathepsin B-like CP3 OS=Giardia lamblia GN=CP3 PE=... [more]
CPR6_CAEEL9.958e-1758.46Cathepsin B-like cysteine proteinase 6 OS=Caenorha... [more]
CPR4_CAEEL9.958e-1761.40Cathepsin B-like cysteine proteinase 4 OS=Caenorha... [more]
CPR5_CAEEL2.218e-1663.16Cathepsin B-like cysteine proteinase 5 OS=Caenorha... [more]
CATB2_GIALA3.784e-1660.00Cathepsin B-like CP2 OS=Giardia lamblia GN=CP2 PE=... [more]
CPR3_CAEEL2.453e-1550.00Cathepsin B-like cysteine proteinase 3 OS=Caenorha... [more]
CPR1_CAEEL2.453e-1557.89Gut-specific cysteine proteinase OS=Caenorhabditis... [more]
CATB_RAT2.453e-1551.67Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2[more]
CATB_PONAB2.453e-1548.48Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1[more]
CATB_MACFA2.453e-1548.48Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833118 ID=CF833118; Name=CF833118; organism=Citrus sinensis; type=EST; length=689bp
TTTTTTTTTTTTTTTTTGGAGCAATGATGTGACATTTTTCATCTAAACGA
ATAATTCGGCGAGGAGAAACGAAGTTATTACAACTGGTTCTATTTTTACA
CACAACATTAAACTCCATTAATACATTCAATTATGCAAGACGGGAGCTTC
CCATTTCATGCCTTGATAGCTTAGGGTCAACGATACACCCCTATAGCTAC
ACATTTGATATATAAATAACAACATGAAGGGATAGCAAAGTCTGCTCTCA
AGCTGAAGCATCCTCAAACATATCTGCACTTGTAATCTCTTTGACAAGAT
TTTTGGATGAAGGGAAACCAGCAACCACATCCTCTTCAATACCACACTCA
TTTGATCCTCTTTTAATCTTGAAGTAACCATCCGCACCCCAGCTTCTATT
CCACTGATTAGCGAGAATCCAGTAATCCTCGCCATCATCACTAGTTCCCC
AACCAATAAGCTTAACAGCATGACCCCCAAGGAACCGAACGACGCCGTCG
TTTACATCTTCATTTACGTCGTCAACGACAGCAACTCAGCCAAAGCCCGC
CTGGCAACCCAGCAAGCCGTCATGGACTCACCAACCAGCGCAGACCGGGA
TAGAAAGCGCTCCCGTTTCTATGGTGGGTGATATTCATGGCAAGAGTTGG
GCGACTACGGCCCCGTCCAAGTCCAGTTCTGGGATTGGG
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