CF833129

Overview
NameCF833129
Unique NameCF833129
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10123 contig Csv1_Contig10123:1063..1919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833129 vs. ExPASy Swiss-Prot
Match: ALA2_PANMI (Alanine aminotransferase 2 OS=Panicum miliaceum PE=1 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 3.192e-96
Identity = 167/225 (74.22%), Postives = 193/225 (85.78%), Query Frame = -3
Query:  195 DEVYQENVYVPEKKFHSLKKVSRSMGYGEKDISLVSFQSVSKGYHGECGKRGGYMEVTGFSPEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKSFMDKFRN 869
            DEVYQEN+YV +KKF+S KK++RS+GYGE D+ LVSFQSVSKGY+GECGKRGGYME+TGFS  VREQIYK+ASVNLCSNI+GQILASLVM+PPKVGDESY +Y AE+DGIL SLARRAK LEDAFN+LEGI+CNKAEGAMYLFP+I LP             PDAFY  RLL +TGIV+VPGSGFGQVPGTWH RCTILPQEDKIPA++TR   FH++FM ++R+
Sbjct:  258 DEVYQENIYVDDKKFNSFKKIARSVGYGEDDLPLVSFQSVSKGYYGECGKRGGYMEITGFSAPVREQIYKIASVNLCSNITGQILASLVMNPPKVGDESYAAYKAEKDGILQSLARRAKALEDAFNNLEGISCNKAEGAMYLFPQIHLPKKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHIRCTILPQEDKIPAVITRFKAFHEAFMAEYRD 482          
BLAST of CF833129 vs. ExPASy Swiss-Prot
Match: ALA2_HORVU (Alanine aminotransferase 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 1.341e-94
Identity = 164/225 (72.89%), Postives = 190/225 (84.44%), Query Frame = -3
Query:  195 DEVYQENVYVPEKKFHSLKKVSRSMGYGEKDISLVSFQSVSKGYHGECGKRGGYMEVTGFSPEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKSFMDKFRN 869
            DEVYQEN+YV  KKFHS KK+ RS+GYGE+D+ LVS+QSVSKGY+GECGKRGGY E+TGFS  VREQIYK+ASVNLCSNI+GQILASLVM+PPK  DESY SY AE+DGIL+SLARRAK LE AFN LEGITCN+AEGAMY+FP+I LP             PDAFY  RLL +TGIV+VPGSGFGQVPGTWHFRCTILPQEDKIPA+++R T FH++FM ++R+
Sbjct:  258 DEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTVFHEAFMSEYRD 482          
BLAST of CF833129 vs. ExPASy Swiss-Prot
Match: ALAM_DICDI (Probable alanine aminotransferase, mitochondrial OS=Dictyostelium discoideum GN=gpt PE=3 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 8.193e-68
Identity = 122/225 (54.22%), Postives = 159/225 (70.67%), Query Frame = -3
Query:  198 DEVYQENVYVPEKK-FHSLKKVSRSMGYGEKDISLVSFQSVSKGYHGECGKRGGYMEVTGFSPEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKSFMDKFR 869
            DEVYQENVYV E K F S KKV + MG    D+ +VSF SVSKG+ GECGKRGGYME+ G + +V+ +IYK+AS+ LC N+ GQ++  L++ PP  G++S++ Y  ERD I  SL +RA  L +A N+LEG+TCN +EGAMY FP+I+LP             PDA+YC +LL ATGI +VPGSGFGQ  GTWHFR T LP E+ I  +  R+ DFH+SFM+K++
Sbjct:  310 DEVYQENVYVKESKPFISFKKVVKDMGGDYADLEMVSFHSVSKGFVGECGKRGGYMELNGVTQDVKAEIYKLASIGLCPNVIGQLVVDLMVRPPVAGEQSHDLYLKERDNIYESLKKRANLLTNALNNLEGVTCNPSEGAMYAFPQIRLPAKAVEYANSIGKAPDAYYCIQLLEATGICVVPGSGFGQKDGTWHFRTTFLPSEEAIEGVCKRIADFHQSFMNKYK 534          
BLAST of CF833129 vs. ExPASy Swiss-Prot
Match: ALAT2_MOUSE (Alanine aminotransferase 2 OS=Mus musculus GN=Gpt2 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 5.687e-61
Identity = 111/224 (49.55%), Postives = 150/224 (66.96%), Query Frame = -3
Query:  201 DEVYQENVYVPEKKFHSLKKVSRSMGYG-EKDISLVSFQSVSKGYHGECGKRGGYMEVTGFSPEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKSFMDKF 869
            DEVYQ+NVY P+ +FHS KKV   MG+    ++ L SF S SKGY GECG RGGYMEV    PE++ Q+ K+ SV LC  +SGQ    +V++PP+ G+ES+E +  E++ +L +LA++AK  ED FN + GI CN  +GAMY FPRI +P          K  PD FYC +LL  TGI +VPGSGFGQ  GT+HFR TILP  DK+  ++ ++ DFH  F++++
Sbjct:  298 DEVYQDNVYSPDCRFHSFKKVLYQMGHEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPEPGEESFEQFSREKEFVLGNLAKKAKLTEDLFNQVPGIQCNPLQGAMYAFPRILIPAKAVEAAQSHKMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVDKLKTVLHKVKDFHLKFLEQY 521          
BLAST of CF833129 vs. ExPASy Swiss-Prot
Match: ALAT2_HUMAN (Alanine aminotransferase 2 OS=Homo sapiens GN=GPT2 PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.655e-60
Identity = 110/224 (49.11%), Postives = 149/224 (66.52%), Query Frame = -3
Query:  201 DEVYQENVYVPEKKFHSLKKVSRSMGYG-EKDISLVSFQSVSKGYHGECGKRGGYMEVTGFSPEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKSFMDKF 869
            DEVYQ+NVY P+ +FHS KKV   MG     ++ L SF S SKGY GECG RGGYMEV    PE++ Q+ K+ SV LC  +SGQ    +V++PP  G+ES+E +  E++ +L +LA++AK  ED FN + GI CN  +GAMY FPRI +P          +  PD FYC +LL  TGI +VPGSGFGQ  GT+HFR TILP  +K+  ++ ++ DFH +F++K+
Sbjct:  299 DEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKDFHINFLEKY 522          
BLAST of CF833129 vs. ExPASy Swiss-Prot
Match: ALAT2_XENLA (Alanine aminotransferase 2 OS=Xenopus laevis GN=gpt2 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.186e-58
Identity = 110/225 (48.89%), Postives = 145/225 (64.44%), Query Frame = -3
Query:  201 DEVYQENVYVPEKKFHSLKKVSRSMG--YGEKDISLVSFQSVSKGYHGECGKRGGYMEVTGFSPEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKSFMDKF 869
            DEVYQ+NVY     FHS KKV   MG  Y E  + L SF S SKGY GECG RGGYMEV    P V++Q+ K+ SV LC  + GQ+L  ++++PPK G+ SY+ + +E+  +L++LA +A+  E+  N   GI CN  +GAMY FPRI +P             PD F+C +LL  TGI +VPGSGFGQ  GT HFR TILP  DK+ +++ RL DFH+ FMD++
Sbjct:  316 DEVYQDNVYAKGCAFHSFKKVLFEMGPKYSET-LELASFHSTSKGYMGECGFRGGYMEVINMDPAVKQQLTKLVSVRLCPPVPGQVLLDVIVNPPKPGEPSYKQFISEKQAVLNNLAEKARLTEEILNQAPGIRCNPVQGAMYSFPRIHIPEKAIKLAQAEGQAPDMFFCMKLLEETGICVVPGSGFGQREGTHHFRMTILPPTDKLKSLLERLKDFHQKFMDEY 539          
BLAST of CF833129 vs. ExPASy Swiss-Prot
Match: ALAT2_XENTR (Alanine aminotransferase 2 OS=Xenopus tropicalis GN=gpt2 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.921e-57
Identity = 109/225 (48.44%), Postives = 142/225 (63.11%), Query Frame = -3
Query:  201 DEVYQENVYVPEKKFHSLKKVSRSMG--YGEKDISLVSFQSVSKGYHGECGKRGGYMEVTGFSPEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKSFMDKF 869
            DEVYQ+NVY     FHS KKV   MG  Y E  + L SF S SKGY GECG RGGYMEV    P V++Q+ K+ SV LC  + GQ L  ++++PPK G+ SY+ + AE+  +L +LA +A+  E+  N   GI CN  +GAMY FPRI +P             PD F+C +LL  TGI +VPGSGFGQ  GT HFR TILP  DK+ +++ RL DFH+ F +++
Sbjct:  300 DEVYQDNVYAKGCTFHSFKKVLFEMGPKYSET-VELASFHSTSKGYMGECGFRGGYMEVINMDPAVKQQLTKLVSVRLCPPVPGQALLDVIVNPPKPGEPSYKQFMAEKQAVLGNLAEKARLTEEILNQSPGIRCNPVQGAMYSFPRIHIPEKAIKLAQAEGQAPDMFFCMKLLEETGICVVPGSGFGQREGTHHFRMTILPPTDKLKSLLERLKDFHQKFTEEY 523          
BLAST of CF833129 vs. ExPASy Swiss-Prot
Match: ALAT2_DANRE (Alanine aminotransferase 2-like OS=Danio rerio GN=gpt2l PE=2 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 2.473e-56
Identity = 111/225 (49.33%), Postives = 143/225 (63.56%), Query Frame = -3
Query:  201 DEVYQENVYVPEKKFHSLKKVSRSMG--YGEKDISLVSFQSVSKGYHGECGKRGGYMEVTGFSPEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKSFMDKF 869
            DEVYQ+NVY    +FHS KKV   MG  Y +K + L SF S SK Y GECG RGGYMEV     +V+ Q+ K+ SV LC    GQ L  LV++PP+ G+ S++++  ER  +LS+LA +AK  E   N++ GI+CN  +GAMY FPRI LP             PD FYC +LL  TGI LVPGSGFGQ  GT+HFR TILP  DK+  ++ +L DFH+ F  ++
Sbjct:  325 DEVYQDNVYAKGCEFHSFKKVLFEMGPEYSKK-VELASFHSTSKCYMGECGFRGGYMEVINMDADVKAQLTKLVSVRLCPPAPGQALMDLVVNPPQPGEPSHQTFMQERTAVLSALAEKAKLTEQILNTVPGISCNPVQGAMYSFPRITLPERAISEAKAKGQAPDMFYCMKLLEETGICLVPGSGFGQREGTYHFRMTILPPTDKLKLMLNKLKDFHQRFTQQY 548          
BLAST of CF833129 vs. ExPASy Swiss-Prot
Match: ALAM_YEAST (Probable alanine aminotransferase, mitochondrial OS=Saccharomyces cerevisiae GN=ALT1 PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.229e-56
Identity = 116/231 (50.22%), Postives = 151/231 (65.37%), Query Frame = -3
Query:  195 DEVYQENVYVPEKKFHSLKKVSRSMGY---GEKD-ISLVSFQSVSKGYHGECGKRGGYMEVTGFSPEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAI--VTRLTDFHKSFMDKFRN 869
            DEVYQEN++ P  KFHS+KK+ R +     G+ D + L S  S SKG  GECG+RGGYME+TGFS E+R+ I K+AS++LC  ++GQ L  L++ PP  G+ES+ES  AER+ I   L  RA TL + FNSLEGI C K +GAMYLFP+I LP          +  PD FYC++LL +TGI  VPGSGFGQ PGT+H R T L      P +  + +   FHK F D++R+
Sbjct:  368 DEVYQENIF-PGTKFHSMKKILRHLQREHPGKFDNVQLASLHSTSKGVSGECGQRGGYMELTGFSHEMRQVILKLASISLCPVVTGQALVDLMVRPPVEGEESFESDQAERNSIHEKLITRAMTLYETFNSLEGIECQKPQGAMYLFPKIDLPFKAVQEARHLELTPDEFYCKKLLESTGICTVPGSGFGQEPGTYHLRTTFL-----APGLEWIKKWESFHKEFFDQYRD 592          
BLAST of CF833129 vs. ExPASy Swiss-Prot
Match: ALAT1_BOVIN (Alanine aminotransferase 1 OS=Bos taurus GN=GPT PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.772e-54
Identity = 107/225 (47.56%), Postives = 137/225 (60.89%), Query Frame = -3
Query:  201 DEVYQENVYVPEKKFHSLKKVSRSMG--YGEKDISLVSFQSVSKGYHGECGKRGGYMEVTGFSPEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKSFMDKF 869
            DEVYQ+NVY    +FHS KKV   MG  Y  +   L SF S+SKGY GECG RGGY+EV      V++Q+ K+ SV LC    GQ+L  + +SPP   D S+  + AER  +L+ LA +AK  E  FN   GI CN  +GAMY FPR+QLP             PD F+C RLL  TGI +VPGSGFGQ  GT+HFR TILP  +K+  ++ +L+ FH  F  ++
Sbjct:  272 DEVYQDNVYAESSQFHSFKKVLTEMGPPYAAQQ-ELASFHSISKGYMGECGFRGGYVEVVNMDAAVKQQMQKLRSVRLCPPTPGQVLLDVAVSPPAPSDPSFPRFQAERRAVLAELAAKAKLTEQVFNEAPGIRCNPVQGAMYSFPRVQLPPRAVQRAQELGLAPDMFFCLRLLEETGICVVPGSGFGQREGTYHFRMTILPPMEKLRPLLEKLSQFHAKFTREY 495          
The following BLAST results are available for this feature:
BLAST of CF833129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
ALA2_PANMI3.192e-9674.22Alanine aminotransferase 2 OS=Panicum miliaceum PE... [more]
ALA2_HORVU1.341e-9472.89Alanine aminotransferase 2 OS=Hordeum vulgare PE=2... [more]
ALAM_DICDI8.193e-6854.22Probable alanine aminotransferase, mitochondrial O... [more]
ALAT2_MOUSE5.687e-6149.55Alanine aminotransferase 2 OS=Mus musculus GN=Gpt2... [more]
ALAT2_HUMAN1.655e-6049.11Alanine aminotransferase 2 OS=Homo sapiens GN=GPT2... [more]
ALAT2_XENLA1.186e-5848.89Alanine aminotransferase 2 OS=Xenopus laevis GN=gp... [more]
ALAT2_XENTR2.921e-5748.44Alanine aminotransferase 2 OS=Xenopus tropicalis G... [more]
ALAT2_DANRE2.473e-5649.33Alanine aminotransferase 2-like OS=Danio rerio GN=... [more]
ALAM_YEAST3.229e-5650.22Probable alanine aminotransferase, mitochondrial O... [more]
ALAT1_BOVIN1.772e-5447.56Alanine aminotransferase 1 OS=Bos taurus GN=GPT PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03B05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833129 ID=CF833129; Name=CF833129; organism=Citrus sinensis; type=EST; length=871bp
TTTTTTTTTGCAAAACCTTGTAATATTTCATCGTAACAAAGACCTATGAC
CGCCATTAAAACAAAAAAAAAAAAACAAAGAGGAAAAAAAGTACGCTTTG
TCCATTCACTCTGTAAACGTTTGACAATTGAAATGAATGGCTACACATTA
TTTTTCTGAACTCAGTCTCGTATTATTATGCAGAAGATCTTTCAATTACG
GAATTTGTCCATGAAACTTTTATGGAAGTCTGTCAGCCGGGTCACAATCG
CTGGAATCTTGTCCTCTTGAGGCAATATGGTGCACCTAAAATGCCAAGTG
CCGGGGACCTGCCCAAAACCAGAACCAGGAACAAGAACAATTCCAGTGGC
ATTGAGAAGGCGGCGACAATAAAATGCATCTGGAACAGTTTTTTCAGCTT
CAGCAGCTTTAATTGCCTTTTCAGGCAGTTGAATACGAGGAAAGAGATAC
ATTGCTCCTTCAGCCTTGTTACATGTTATTCCTTCCAAACTGTTAAATGC
ATCTTCCAATGTCTTTGCACGCCTGGCTAAAGATGAGAGGATTCCATCCC
TCTCAGCGCAATAGGACTCATAAGATTCATCTCCAACCTTAGGTGGACTC
ATGACGAGGCTTGCCAGAATTTGGCCGGAGATATTAGAACAAAGATTCAC
AGATGCCACTTTGTATATTTGCTCCCTTACTTCAGGACTGAACCCAGTGA
CCTCCATGTAACCTCCTCTTTTTCCACACTCCCCATGGTAACCTTTAGAA
ACTGACTGAAATGATACAAGGGATATATCCTTCTCACCATACCCCATGGA
TCGGGATACCTTCTTTAAGGAATGGAATTTTTTCTCTGGCACATAAACAT
TTTCCTGGTATACCTCATCTG
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