CF833199

Overview
NameCF833199
Unique NameCF833199
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7082 contig Csv1_Contig7082:1054..1630. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833199 vs. ExPASy Swiss-Prot
Match: PAPSS_URECA (Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase OS=Urechis caupo PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.833e-34
Identity = 63/104 (60.58%), Postives = 80/104 (76.92%), Query Frame = -2
Query:  266 AKLYIFGRDPAGMGHPVEKRDLYDAAHGKKVMSMVPGLERLNILPFKVAGYDKTQGKMAFFDPSRGQDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEYY 577
            A  YI GRDPAGM HP  K+DLY+A HG KV++M PGL +L I+PF+VA Y+KT+  M F+DP R  +F+FISGTKMR +AR+ E PP+GFM P  WK++VEYY
Sbjct:  500 ANFYIVGRDPAGMPHPETKQDLYNATHGAKVLTMAPGLTQLEIVPFRVAAYNKTKSAMDFYDPERHDEFMFISGTKMRGMARAGETPPNGFMAPSAWKIMVEYY 603          
BLAST of CF833199 vs. ExPASy Swiss-Prot
Match: PAPS2_HUMAN (Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 OS=Homo sapiens GN=PAPSS2 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 3.133e-33
Identity = 65/107 (60.75%), Postives = 78/107 (72.90%), Query Frame = -2
Query:  257 AKLYIFGRDPAGMGHPVEKRDLYDAAHGKKVMSMVPGLERLNILPFKVAGYDKTQGKMAFFDPSRGQDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEYYDSL 577
            A  YI GRDPAGM HP  K+DLY+  HG KV+SM PGL  + I+PF+VA Y+K +  M F+DP+R  +F FISGT+MR LAR  ENPPDGFM P  WKVL +YY SL
Sbjct:  505 ANFYIVGRDPAGMPHPETKKDLYEPTHGGKVLSMAPGLTSVEIIPFRVAAYNKAKKAMDFYDPARHNEFDFISGTRMRKLAREGENPPDGFMAPKAWKVLTDYYRSL 611          
BLAST of CF833199 vs. ExPASy Swiss-Prot
Match: PAPS2_MOUSE (Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 OS=Mus musculus GN=Papss2 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 9.115e-33
Identity = 64/107 (59.81%), Postives = 79/107 (73.83%), Query Frame = -2
Query:  257 AKLYIFGRDPAGMGHPVEKRDLYDAAHGKKVMSMVPGLERLNILPFKVAGYDKTQGKMAFFDPSRGQDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEYYDSL 577
            A  YI GRDPAGM HP  K+DLY+  HG KV+SM PGL  + I+PF+VA Y+K +  M F+DP+R ++F FISGT+MR LAR  E+PPDGFM P  WKVL +YY SL
Sbjct:  511 ANFYIVGRDPAGMPHPETKKDLYEPTHGGKVLSMAPGLTSVEIIPFRVAAYNKIKKAMDFYDPARHEEFDFISGTRMRKLAREGEDPPDGFMAPKAWKVLTDYYRSL 617          
BLAST of CF833199 vs. ExPASy Swiss-Prot
Match: PAPS1_MOUSE (Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 OS=Mus musculus GN=Papss1 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.242e-30
Identity = 61/110 (55.45%), Postives = 76/110 (69.09%), Query Frame = -2
Query:  248 AKLYIFGRDPAGMGHPVEKRDLYDAAHGKKVMSMVPGLERLNILPFKVAGYDKTQGKMAFFDPSRGQDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEYYDSLTPA 577
            A  YI GRDPAGM HP   +DLY+  HG KV++M PGL  L I+PF+VA Y+K + +M ++D    +DF FISGT+MR LAR  + PP+GFM P  W VLVEYY SL  A
Sbjct:  515 ANFYIVGRDPAGMPHPETGKDLYEPTHGAKVLTMAPGLITLEIVPFRVAAYNKKKKRMDYYDSEHHEDFEFISGTRMRKLAREGQKPPEGFMAPKAWTVLVEYYKSLEKA 624          
BLAST of CF833199 vs. ExPASy Swiss-Prot
Match: PAPS1_HUMAN (Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 OS=Homo sapiens GN=PAPSS1 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 7.222e-30
Identity = 60/110 (54.55%), Postives = 76/110 (69.09%), Query Frame = -2
Query:  248 AKLYIFGRDPAGMGHPVEKRDLYDAAHGKKVMSMVPGLERLNILPFKVAGYDKTQGKMAFFDPSRGQDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEYYDSLTPA 577
            A  YI GRDPAGM HP   +DLY+ +HG KV++M PGL  L I+PF+VA Y+K + +M ++D    +DF FISGT+MR LAR  + PP+GFM P  W VL EYY SL  A
Sbjct:  515 ANFYIVGRDPAGMPHPETGKDLYEPSHGAKVLTMAPGLITLEIVPFRVAAYNKKKKRMDYYDSEHHEDFEFISGTRMRKLAREGQKPPEGFMAPKAWTVLTEYYKSLEKA 624          
BLAST of CF833199 vs. ExPASy Swiss-Prot
Match: PAPS1_CAVPO (Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 OS=Cavia porcellus GN=PAPSS1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.681e-29
Identity = 59/110 (53.64%), Postives = 74/110 (67.27%), Query Frame = -2
Query:  248 AKLYIFGRDPAGMGHPVEKRDLYDAAHGKKVMSMVPGLERLNILPFKVAGYDKTQGKMAFFDPSRGQDFLFISGTKMRTLARSKENPPDGFMCPGGWKVLVEYYDSLTPA 577
            A  YI GRDPAGM HP   +DLY   HG KV++M PGL  L I+PF+VA Y+K + +M ++D    +DF FISGT+MR LAR  + PP+GFM P  W VL EYY +L  A
Sbjct:  515 ANFYIVGRDPAGMPHPETGKDLYKPTHGAKVLTMAPGLITLEIVPFRVAAYNKRKKRMDYYDAEHHEDFEFISGTRMRRLAREGQKPPEGFMAPTAWAVLAEYYKALEKA 624          
The following BLAST results are available for this feature:
BLAST of CF833199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PAPSS_URECA4.833e-3460.58Bifunctional 3'-phosphoadenosine 5'-phosphosulfate... [more]
PAPS2_HUMAN3.133e-3360.75Bifunctional 3'-phosphoadenosine 5'-phosphosulfate... [more]
PAPS2_MOUSE9.115e-3359.81Bifunctional 3'-phosphoadenosine 5'-phosphosulfate... [more]
PAPS1_MOUSE3.242e-3055.45Bifunctional 3'-phosphoadenosine 5'-phosphosulfate... [more]
PAPS1_HUMAN7.222e-3054.55Bifunctional 3'-phosphoadenosine 5'-phosphosulfate... [more]
PAPS1_CAVPO4.681e-2953.64Bifunctional 3'-phosphoadenosine 5'-phosphosulfate... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_03D06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833199 ID=CF833199; Name=CF833199; organism=Citrus sinensis; type=EST; length=578bp
ATGCCAGTGTAATGTAAGATGCCACAAAAGTGGCACTTTAATTACATAAA
GAGGCAAATCTTGTGTCTCTGTACCAGTGCCTCACCTTGGTTTTATTAAG
AAATCTGGACAGAGAATTTTTTTCACAATCTGGATGTGACAGCTGACAGT
GGAGATAAATCGGTTGTAAAGTTTCTCCCCATCAAATGACAAATACATTA
TCATACAGCAATTTCATCTAAGCTGGAACAGGGACTTTGCCATTGTCAGC
TGGAGTCAGACTGTCGTAATATTCAACCAGCACTTTCCAGCCACCAGGGC
ACATAAATCCATCCGGAGGATTCTCTTTGCTCCTTGCGAGCGTTCGCATC
TTGGTGCCTGATATGAAAAGGAAGTCCTGACCCCTTGAAGGATCAAAGAA
TGCCATTTTGCCTTGAGTCTTGTCATACCCTGCAACCTTGAAAGGAAGGA
TGTTTAGCCGCTCTAGTCCAGGAACCATGCTCATTACCTTTTTGCCATGG
GCAGCGTCGTACAGATCTCTCTTCTCAACTGGGTGGCCCATGCCAGCTGG
GTCCCTACCAAAAATATAAAGCTTGGCC
back to top