CF833237

Overview
NameCF833237
Unique NameCF833237
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833237 vs. ExPASy Swiss-Prot
Match: SLY1_ARATH (SEC1 family transport protein SLY1 OS=Arabidopsis thaliana GN=SLY1 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.952e-40
Identity = 83/111 (74.77%), Postives = 94/111 (84.68%), Query Frame = -3
Query:  369 QLALTRTVEALVEGRPNPEIDSYLMFDPRAPKSSS-GSNHLKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALLGQKMGLGNTVAPST 698
            QLA+TRTVEAL EG+PNPEIDSY   DPRAPKSSS G +H+KGPF+EAIVFMIGGGNY+EYGSLQEL +RQ  VK+VIYG TEIL G E VEQL LLG+KMGLG  VA ++
Sbjct:  512 QLAVTRTVEALTEGKPNPEIDSYRFLDPRAPKSSSSGGSHVKGPFREAIVFMIGGGNYVEYGSLQELTQRQLTVKNVIYGATEILNGGELVEQLGLLGKKMGLGGPVASTS 622          
BLAST of CF833237 vs. ExPASy Swiss-Prot
Match: SLY1_ORYSJ (SEC1 family transport protein SLY1 OS=Oryza sativa subsp. japonica GN=SLY1 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.392e-34
Identity = 70/103 (67.96%), Postives = 84/103 (81.55%), Query Frame = -3
Query:  390 QLALTRTVEALVEGRPNPEIDSYLMFDPRAPKSSSGSNHLKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALLGQKMGLG 698
            QLA TR VEAL+EG+PNPE+D+YL+FDPRAPKS + +   +GPF+EAIVFMIGGGNY+EY SL EL +R Q  K VIYG TEIL G EF++QL+ LGQK GLG
Sbjct:  513 QLAATRAVEALMEGKPNPEVDNYLLFDPRAPKSGT-AGQFRGPFREAIVFMIGGGNYIEYRSLTELTQRSQTTKQVIYGATEILNGVEFIQQLSELGQKAGLG 614          
BLAST of CF833237 vs. ExPASy Swiss-Prot
Match: SCFD1_MOUSE (Sec1 family domain-containing protein 1 OS=Mus musculus GN=Scfd1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.147e-18
Identity = 46/99 (46.46%), Postives = 68/99 (68.69%), Query Frame = -3
Query:  402 LALTRTVEALVEGRPNPEIDSYLMFDPRAPKSSSGS-NHLKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALLGQK 695
            L +TR ++ L+E + NPE D Y  FDP+  +S+  S    K PF+EAIVF++GGGNY+EY +L +  K +Q  KH++YG +EI    +F++QL+ LGQK
Sbjct:  542 LPVTRILDNLMEMKSNPETDDYRYFDPKMLRSNDSSVPRNKSPFQEAIVFVVGGGNYIEYQNLVDYIKAKQG-KHILYGCSEIFNATQFIKQLSQLGQK 639          
BLAST of CF833237 vs. ExPASy Swiss-Prot
Match: SCFD1_RAT (Sec1 family domain-containing protein 1 OS=Rattus norvegicus GN=Scfd1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.417e-18
Identity = 46/99 (46.46%), Postives = 68/99 (68.69%), Query Frame = -3
Query:  402 LALTRTVEALVEGRPNPEIDSYLMFDPRAPKSSSGS-NHLKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALLGQK 695
            L +TR ++ L+E + NPE D Y  FDP+  +S+  S    K PF+EAIVF++GGGNY+EY +L +  K +Q  KH++YG +EI    +F++QL+ LGQK
Sbjct:  540 LPVTRILDNLMEMKSNPETDDYRYFDPKMLRSNDSSVPRNKSPFQEAIVFVVGGGNYIEYQNLVDYIKGKQG-KHILYGCSEIFNATQFIKQLSQLGQK 637          
BLAST of CF833237 vs. ExPASy Swiss-Prot
Match: SCFD1_HUMAN (Sec1 family domain-containing protein 1 OS=Homo sapiens GN=SCFD1 PE=1 SV=4)

HSP 1 Score: 88.9669 bits (219), Expect = 2.688e-17
Identity = 44/99 (44.44%), Postives = 67/99 (67.68%), Query Frame = -3
Query:  402 LALTRTVEALVEGRPNPEIDSYLMFDPRAPKSSSGS-NHLKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALLGQK 695
            L +TR ++ L+E + NPE D Y  FDP+  + +  S    K PF+EAIVF++GGGNY+EY +L +  K +Q  KH++YG +E+    +F++QL+ LGQK
Sbjct:  545 LPVTRILDNLMEMKSNPETDDYRYFDPKMLRGNDSSVPRNKNPFQEAIVFVVGGGNYIEYQNLVDYIKGKQG-KHILYGCSELFNATQFIKQLSQLGQK 642          
BLAST of CF833237 vs. ExPASy Swiss-Prot
Match: SLY1_SCHPO (Protein sly1 OS=Schizosaccharomyces pombe GN=sly1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.782e-14
Identity = 39/101 (38.61%), Postives = 69/101 (68.32%), Query Frame = -3
Query:  411 LTRTVEALVEGRPNP---EIDSYLMFDPRAPKSSSGSN-----HLKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALL 689
            +T  V++L++   +P   + +SYL+ DP++ ++ + +N     + +  F EAIV ++GGGNY+EYG+L + A+ Q P K +IYG+T+IL+  EF+E++A L
Sbjct:  538 ITSIVQSLMDPGSSPASKQTESYLLLDPKSARAITVNNDPRAMNKRQTFSEAIVCVLGGGNYLEYGNLADWAREQNPKKRIIYGSTDILSPSEFMEEMASL 638          
BLAST of CF833237 vs. ExPASy Swiss-Prot
Match: SLY1_DROME (Protein sly1 homolog OS=Drosophila melanogaster GN=Slh PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 36/99 (36.36%), Postives = 60/99 (60.61%), Query Frame = -3
Query:  408 LALTRTVEALVEGRPNPEIDSYLMFDPRAPKSSSGSNHLKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQP---VKHVIYGTTEILTGDEFVEQLALLG 695
            L +T+  E ++E R N E D YL  DP+  K        + PF++A+VFM+GGGNY+EY +L +  K++Q     + +IYG + +    +F+++L+ LG
Sbjct:  549 LPVTKITEQVMECRSNAETDDYLYLDPKLLKGGEVLPKNRAPFQDAVVFMVGGGNYIEYQNLVDFIKQKQTSNVQRRIIYGASTLTNARQFLKELSALG 647          
BLAST of CF833237 vs. ExPASy Swiss-Prot
Match: SCFD1_DICDI (Sec1 family domain-containing protein 1 homolog OS=Dictyostelium discoideum GN=scfd1 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 40/97 (41.24%), Postives = 61/97 (62.89%), Query Frame = -3
Query:  405 LALTRTVEALVEGRPNPEIDSYLMFDPRAPKSSSGSNHLKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALLGQ 695
            L +TR VE++++ +   + D YL  DP+    S+       PFKEAIVF +GGGNY+EY +LQ+ +K+    K +IYG+ E+LT  EF+ Q+  L +
Sbjct:  580 LFVTRIVESIMDLKNTLDAD-YLYLDPKIQNKSNVPKRTT-PFKEAIVFTVGGGNYVEYQNLQDFSKKHN--KKIIYGSNELLTSKEFLNQIKNLNK 672          
BLAST of CF833237 vs. ExPASy Swiss-Prot
Match: SLY1_DROVI (Protein sly1 homolog OS=Drosophila virilis GN=Slh PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.801e-12
Identity = 35/99 (35.35%), Postives = 59/99 (59.60%), Query Frame = -3
Query:  408 LALTRTVEALVEGRPNPEIDSYLMFDPRAPKSSSGSNHLKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPV---KHVIYGTTEILTGDEFVEQLALLG 695
            L +T+  E ++E R N E D YL   P+  K        + PF++A+VFM+GGGNY+EY +L +  K++Q     + +IYG + +    +F+++L+ LG
Sbjct:  549 LPVTKITEQVMECRSNAETDDYLYLAPKLLKGGDVLPKNRAPFQDAVVFMVGGGNYIEYQNLVDFIKQKQTSNVHRRIIYGGSTLTNARQFLKELSALG 647          
The following BLAST results are available for this feature:
BLAST of CF833237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SLY1_ARATH2.952e-4074.77SEC1 family transport protein SLY1 OS=Arabidopsis ... [more]
SLY1_ORYSJ5.392e-3467.96SEC1 family transport protein SLY1 OS=Oryza sativa... [more]
SCFD1_MOUSE4.147e-1846.46Sec1 family domain-containing protein 1 OS=Mus mus... [more]
SCFD1_RAT5.417e-1846.46Sec1 family domain-containing protein 1 OS=Rattus ... [more]
SCFD1_HUMAN2.688e-1744.44Sec1 family domain-containing protein 1 OS=Homo sa... [more]
SLY1_SCHPO2.782e-1438.61Protein sly1 OS=Schizosaccharomyces pombe GN=sly1 ... [more]
SLY1_DROME4.017e-1336.36Protein sly1 homolog OS=Drosophila melanogaster GN... [more]
SCFD1_DICDI1.994e-1241.24Sec1 family domain-containing protein 1 homolog OS... [more]
SLY1_DROVI5.801e-1235.35Protein sly1 homolog OS=Drosophila virilis GN=Slh ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_03E08_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833237 ID=CF833237; Name=CF833237; organism=Citrus sinensis; type=EST; length=700bp
TTTTTATTGATCCCTATAAAGTTAACAAAATAATTCTCTGAGGTTAAGGT
TTCCCTTACAGTGCAAAATGAAACAGGTACATTCCAACAACAGAAGCTTA
CTTCAAAGAAGATGCCTAATTGCTATTAAGCTAAAAACATTCTTCTACAT
TGTCAAAAGAACGGTATGTTTTGAGTCTCACTTAAAACACTCAGGGGCCA
ATATAACCAATAAACAAGCACACACACCAACCCCATCGCGTTCCTTCACA
AATATTCAGCTCCAAAACCTGCCTCGGCATCAATTCCCAGTGTGCCTCCT
TATAAGCATAAAATCACCAAATGAAAGTCTTACAAGAAAGAACATCTATG
ATATATCTGTATTTAATGGGTTGATGGGGCAACAGTGTTTCCCAATCCCA
TCTTCTGGCCCAACAGTGCAAGCTGCTCAACAAACTCATCTCCTGTGAGA
ATTTCTGTTGTTCCGTATATAACATGCTTCACAGGCTGCTGACGCTTCGC
AAGCTCTTGCAAGCTGCCATATTCCATGTAGTTGCCACCACCAATCATGA
ACACAATAGCTTCTTTAAATGGTCCCTTCAGATGGTTGCTACCGGAGCTT
GACTTGGGAGCACGAGGATCAAACATGAGGTACGAGTCAATTTCAGGATT
TGGCCTCCCCTCCACCAAAGCTTCCACTGTCCTTGTCAGTGCCAATTGCC
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