CF833273

Overview
NameCF833273
Unique NameCF833273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1296 contig Csv1_Contig1296:820..1605. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833273 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.175e-28
Identity = 67/173 (38.73%), Postives = 104/173 (60.12%), Query Frame = -2
Query:  262 PLLDVNGNKVESTLKYYIVSAIWXXXXXXXXXXXXXXGYCPLDVIQLPSDMQNGIELTLSPYNNST-IVRESTDLNLRFSVLLSGRD-YCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGTYKIVHCPSVCESCVKHCNNVGR-SFEDGVRRLVL 771
            P+LD +G+++++ ++YY++S+I                 CP  V+Q  SD+ NG  +  S  ++   +VR STD+N+ F  +   RD  C+   +W++DNYD ++GKW++TT G+ G PG  TL +WFK+EK G     YK   CPSVC+SC   C+++GR S +DG  RL L
Sbjct:   30 PVLDTDGDELQTGVQYYVLSSISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPI---RDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVL--GYKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRLAL 197          
BLAST of CF833273 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 3.285e-25
Identity = 64/185 (34.59%), Postives = 97/185 (52.43%), Query Frame = -2
Query:  238 SVPEPLLDVNGNKVESTLKYYIVSAI--WXXXXXXXXXXXXXXGYCPLDVIQLPSDMQNGIELTLSPYN-NSTIVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGTYKIVHCPSVCESCVKHCNNVGRSFEDGVRRLVLVRDDEPAF 783
            S P P+LD++G K+ +   YYIV  +                   CP  V+Q   ++ +   L   P N    +VR STDLN+ FS  +  R       +W++D YD ++G++F+T GG+ G+PG ET+ +WFK+E+     G YK+V CP+VC SC   C +VG   +   RR + + D   AF
Sbjct:   31 SAPNPVLDIDGEKLRTGTNYYIVPVLRDHGGGLTVSATTPNGTFVCPPRVVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFSAFMPCR--WTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCG-SGFYKLVFCPTVCGSCKVKCGDVGIYIDQKGRRRLALSDKPFAF 212          
BLAST of CF833273 vs. ExPASy Swiss-Prot
Match: LSPI_CARPA (Latex serine proteinase inhibitor OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.412e-21
Identity = 65/179 (36.31%), Postives = 94/179 (52.51%), Query Frame = -2
Query:  253 PEPLLDVNGNKVESTLKYYIVSAIWXXXXXXXXXXXXXXGY-CPLDVIQLPSDMQNGIELTLSPYNN--STIVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGTYKIVHCPSVCESCVKHCNNVGRSFED-GVRRLVLVRD 777
            P+P++D++G  V   + Y++VSAIW                 CPL V+Q P D  NG  +  S   N    IV ES DLN++F++ ++    CNE   WKVD +    G W +T GG  G+ G E+  + FK++K G  P +YK   CPS   + +  CNNV   F+   +RRL+L  D
Sbjct:    3 PKPIVDIDGKPVLYGVDYFVVSAIWGAGGGGLTVYGPGNKKKCPLSVVQDPFD--NGEPIIFSAIKNVKDNIVFESVDLNVKFNITIN----CNETTAWKVDRFPGVIG-WTVTLGGEKGYHGFESTHSMFKIKKAG-LPFSYKFHFCPSYPRTRLIPCNNVDIFFDKYRIRRLILTND 173          
BLAST of CF833273 vs. ExPASy Swiss-Prot
Match: DRTI_DELRE (Kunitz-type serine protease inhibitor DrTI OS=Delonix regia PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.813e-14
Identity = 57/185 (30.81%), Postives = 88/185 (47.57%), Query Frame = -2
Query:  223 EPLLDVNGNKVESTLKYYIVSAIWXXXXXXXXXXXXXXGYCPLDVIQLPSDMQNGIELTLS-PYNNSTIVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGTYKIVHCPSVCESCVKHCNNVGRSFEDGVRRLVLVRDDEPAFPVVLI 774
            E + D+ G  V    +YYIVSAI                 CP+ +IQ  SD+Q G+ +  S P  +   +   T+L + F      +  C E   W +      SG+  +  GG + HP  E +  +FK+EK+G+    YK+V CP   +S    C+++G ++E G R LVL   D+  F VV +
Sbjct:    4 EKVYDIEGYPVFLGSEYYIVSAIIGAGGGGVRPGRTRGSMCPMSIIQEQSDLQMGLPVRFSSPEESQGKIYTDTELEIEFVE----KPDCAESSKWVIVK---DSGEARVAIGGSEDHPQGELVRGFFKIEKLGSL--AYKLVFCP---KSSSGSCSDIGINYE-GRRSLVLKSSDDSPFRVVFV 175          
BLAST of CF833273 vs. ExPASy Swiss-Prot
Match: SPOR1_IPOBA (Sporamin A OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.432e-12
Identity = 57/193 (29.53%), Postives = 89/193 (46.11%), Query Frame = -2
Query:  220 SSVPEPLLDVNGNKVESTLKYYIVSAIW-XXXXXXXXXXXXXXGYCPLDVIQLPSDMQNGIELTLSPYN---NSTIVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGTYKIVHCPSVCESCVKHCNNVGRSFEDGVRRLVLVRDDEPAFPVVLIP 786
            +S   P+LD+NG++V +   YY+VSAIW                 C  DVI  P+D+ NG  +T++P      ST+V  ST    RF++  +    C     W +  +D+ASG++F+  G            N FK+E +     +YK+ +C    + C     NVGR  +  +R   L   + P F  V+ P
Sbjct:   37 ASSETPVLDINGDEVRAGGNYYMVSAIWGAGGGGLRLAHLDMMSKCATDVIVSPNDLDNGDPITITPATADPESTVVMASTYQTFRFNI--ATNKLCVNNVNWGI-QHDSASGQYFLKAGEF-----VSDNSNQFKIELVDANLNSYKLTYCQFGSDKCY----NVGRFHDHMLRTTRLALSNSP-FVFVIKP 216          
BLAST of CF833273 vs. ExPASy Swiss-Prot
Match: SPORB_IPOBA (Sporamin B OS=Ipomoea batatas GN=GSPO-B1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.189e-12
Identity = 58/192 (30.21%), Postives = 88/192 (45.83%), Query Frame = -2
Query:  220 SSVPEPLLDVNGNKVESTLKYYIVSAIW--XXXXXXXXXXXXXXGYCPLDVIQLPSDMQNGIELTLSPYN-NSTIVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGTYKIVHCPSVCESCVKHCNNVGRSFEDGVRRLVLVRDDEPAFPVVLIP 786
            +S   P+LD+NG++V +   YYIVSAIW                  C  DVI   SD  NG  +T++P +  +T+V  ST    RF++  +    C     W +  +D+ SG++F+  G            N FK+E + +    YKI    S C+   + C NVGR ++   R   L   + P F  V+ P
Sbjct:   35 ASSETPVLDINGDEVRAGENYYIVSAIWGAGGGGLRLVRLDSSSNECASDVIVSRSDFDNGDPITITPADPEATVVMPSTYQTFRFNI--ATNKLCVNNVNWGI-KHDSESGQYFVKAGEF-----VSDNSNQFKIEVVNDNLNAYKI----SYCQFGTEKCFNVGRYYDPLTRATRLALSNTP-FVFVIKP 213          
BLAST of CF833273 vs. ExPASy Swiss-Prot
Match: SPOR2_IPOBA (Sporamin B OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11
Identity = 57/192 (29.69%), Postives = 88/192 (45.83%), Query Frame = -2
Query:  220 SSVPEPLLDVNGNKVESTLKYYIVSAIW--XXXXXXXXXXXXXXGYCPLDVIQLPSDMQNGIELTLSPYN-NSTIVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGTYKIVHCPSVCESCVKHCNNVGRSFEDGVRRLVLVRDDEPAFPVVLIP 786
            +S   P+LD+NG++V +   YY+VSAIW                  C  DVI   SD  NG  +T++P +  +T+V  ST    RF++  +    C     W +  +D+ SG++F+  G            N FK+E + +    YKI    S C+   + C NVGR ++   R   L   + P F  V+ P
Sbjct:   35 ASSETPVLDINGDEVRAGENYYMVSAIWGAGGGGLRLVRLDSSSNECASDVIVSRSDFDNGDPITITPADPEATVVMPSTYQTFRFNI--ATNKLCVNNVNWGI-KHDSESGQYFVKAGEF-----VSDNSNQFKIEVVNDNLNAYKI----SYCQFGTEKCFNVGRYYDPLTRATRLALSNIP-FVFVIKP 213          
The following BLAST results are available for this feature:
BLAST of CF833273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
ASP_THECC3.175e-2838.7321 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU3.285e-2534.59Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
LSPI_CARPA6.412e-2136.31Latex serine proteinase inhibitor OS=Carica papaya... [more]
DRTI_DELRE5.813e-1430.81Kunitz-type serine protease inhibitor DrTI OS=Delo... [more]
SPOR1_IPOBA1.432e-1229.53Sporamin A OS=Ipomoea batatas PE=2 SV=1[more]
SPORB_IPOBA3.189e-1230.21Sporamin B OS=Ipomoea batatas GN=GSPO-B1 PE=2 SV=1[more]
SPOR2_IPOBA1.212e-1129.69Sporamin B OS=Ipomoea batatas PE=2 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_03F08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833273 ID=CF833273; Name=CF833273; organism=Citrus sinensis; type=EST; length=787bp
TTTTTTTTTTTTTTTTTCAAAAAAGAACACTTGATTTCGATTTTCATCAG
GTATACACCAACAGTAGAATTTATTAACCCCGAAAGGATCACAGGGTTTC
TTATTCATAATTTTAATCCTAGAGATTAAAGAGCAGCTAGCCTGGTCCGT
TATTTAGAATAATAATACCGCTAGCTGGTTAGGGTACATTGATTACACAG
ACGTTGATCTTTCTGTAGCGGGAATTAACACAACAGGAAATGCCGGCTCA
TCATCACGAACCAGAACCAGACGTCGAACGCCATCCTCAAACGAACGGCC
AACGTTGTTGCAGTGTTTTACACAAGACTCGCAAACGGATGGACAATGAA
CGATTTTGTATGTACCTGGAAAATTTCCAATTTTCTCAAGCTTAAACCAA
TTTAGCAAAGTTTCAGCTCCAGGATGACCATCAAGTCCCCCGGTTGTTAT
AAACCATTTGCCTGATGCAGCGTCATAATTATCAACTTTCCACAACGGTT
GTTCGTTACAATAGTCACGTCCAGATAGCAACACTGAGAATCTCAAGTTG
AGATCAGTGGATTCTCGGACAATTGTAGAATTGTTATACGGTGACAGTGT
TAATTCGATTCCATTTTGCATATCAGAAGGTAATTGGATAACGTCCAGCG
GACAATATCCGTTTCTGCCACCGTGTAGGCTAACTCCACCACCGCCAGCT
CCCCAGATGGCTGAGACTATGTAGTACTTAAGGGTGGATTCGACCTTGTT
GCCGTTGACATCAAGGAGAGGTTCAGGAACTGATGAG
back to top