CF833460

Overview
NameCF833460
Unique NameCF833460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833460 vs. ExPASy Swiss-Prot
Match: TM9S4_RAT (Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.026e-29
Identity = 65/159 (40.88%), Postives = 92/159 (57.86%), Query Frame = 2
Query:    2 QIPSHITARKY--PSWLLVPFAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 472
            QIP  I  +++    ++ +  AG LPFG +FIELFFI S+IW  +FYY+FGF                    Y  LC ED+RWWW+ F  SG  A YV +Y+I Y V  L  +   + +LLY GY+ +M ++  L TGTIGF  ++ FV  ++++VKID
Sbjct:  486 QIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643          
BLAST of CF833460 vs. ExPASy Swiss-Prot
Match: TM9S4_PONAB (Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.026e-29
Identity = 65/159 (40.88%), Postives = 92/159 (57.86%), Query Frame = 2
Query:    2 QIPSHITARKY--PSWLLVPFAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 472
            QIP  I  +++    ++ +  AG LPFG +FIELFFI S+IW  +FYY+FGF                    Y  LC ED+RWWW+ F  SG  A YV +Y+I Y V  L  +   + +LLY GY+ +M ++  L TGTIGF  ++ FV  ++++VKID
Sbjct:  485 QIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642          
BLAST of CF833460 vs. ExPASy Swiss-Prot
Match: TM9S4_MOUSE (Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.026e-29
Identity = 65/159 (40.88%), Postives = 92/159 (57.86%), Query Frame = 2
Query:    2 QIPSHITARKY--PSWLLVPFAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 472
            QIP  I  +++    ++ +  AG LPFG +FIELFFI S+IW  +FYY+FGF                    Y  LC ED+RWWW+ F  SG  A YV +Y+I Y V  L  +   + +LLY GY+ +M ++  L TGTIGF  ++ FV  ++++VKID
Sbjct:  486 QIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643          
BLAST of CF833460 vs. ExPASy Swiss-Prot
Match: TM9S4_HUMAN (Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.026e-29
Identity = 65/159 (40.88%), Postives = 92/159 (57.86%), Query Frame = 2
Query:    2 QIPSHITARKY--PSWLLVPFAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 472
            QIP  I  +++    ++ +  AG LPFG +FIELFFI S+IW  +FYY+FGF                    Y  LC ED+RWWW+ F  SG  A YV +Y+I Y V  L  +   + +LLY GY+ +M ++  L TGTIGF  ++ FV  ++++VKID
Sbjct:  485 QIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642          
BLAST of CF833460 vs. ExPASy Swiss-Prot
Match: TM9S4_BOVIN (Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.026e-29
Identity = 65/159 (40.88%), Postives = 92/159 (57.86%), Query Frame = 2
Query:    2 QIPSHITARKY--PSWLLVPFAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 472
            QIP  I  +++    ++ +  AG LPFG +FIELFFI S+IW  +FYY+FGF                    Y  LC ED+RWWW+ F  SG  A YV +Y+I Y V  L  +   + +LLY GY+ +M ++  L TGTIGF  ++ FV  ++++VKID
Sbjct:  485 QIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642          
BLAST of CF833460 vs. ExPASy Swiss-Prot
Match: TM9S2_MOUSE (Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.340e-29
Identity = 65/159 (40.88%), Postives = 91/159 (57.23%), Query Frame = 2
Query:    2 QIPSHITARKYPSWLL--VPFAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 472
            QIP  I  + + +  L  +   G LPFG +FI+LFFIL+SIW  + YY+FGF                    Y HLC ED+ W W++F  SG  A+Y  +Y+I+Y    LQ ++G  S +LY GY++IM +   L TGTIGF   F+FV  ++S VK+D
Sbjct:  505 QIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAIHYFFSKLQ-ITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 662          
BLAST of CF833460 vs. ExPASy Swiss-Prot
Match: TM9S2_RAT (Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.750e-29
Identity = 65/159 (40.88%), Postives = 91/159 (57.23%), Query Frame = 2
Query:    2 QIPSHITARKYPSWLL--VPFAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 472
            QIP  I  + + +  L  +   G LPFG +FI+LFFIL+SIW  + YY+FGF                    Y HLC ED+ W W++F  SG  A+Y  +Y+I+Y    LQ ++G  S +LY GY++IM +   L TGTIGF   F+FV  ++S VK+D
Sbjct:  506 QIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLVYAIHYFFSKLQ-ITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663          
BLAST of CF833460 vs. ExPASy Swiss-Prot
Match: TM9S2_PONAB (Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.750e-29
Identity = 64/159 (40.25%), Postives = 91/159 (57.23%), Query Frame = 2
Query:    2 QIPSHITARKYPSWLL--VPFAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 472
            QIP  I  + + +  L  +   G LPFG +FI+LFFIL+SIW  + YY+FGF                    Y HLC ED+ W W++F  SG  A+Y  +Y+++Y    LQ ++G  S +LY GY++IM +   L TGTIGF   F+FV  ++S VK+D
Sbjct:  506 QIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQ-ITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663          
BLAST of CF833460 vs. ExPASy Swiss-Prot
Match: TM9S2_HUMAN (Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.750e-29
Identity = 64/159 (40.25%), Postives = 91/159 (57.23%), Query Frame = 2
Query:    2 QIPSHITARKYPSWLL--VPFAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 472
            QIP  I  + + +  L  +   G LPFG +FI+LFFIL+SIW  + YY+FGF                    Y HLC ED+ W W++F  SG  A+Y  +Y+++Y    LQ ++G  S +LY GY++IM +   L TGTIGF   F+FV  ++S VK+D
Sbjct:  506 QIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQ-ITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663          
BLAST of CF833460 vs. ExPASy Swiss-Prot
Match: PHG1A_DICDI (Putative phagocytic receptor 1a OS=Dictyostelium discoideum GN=phg1a PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.061e-26
Identity = 56/144 (38.89%), Postives = 85/144 (59.03%), Query Frame = 2
Query:   41 WLLVPFAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 472
            +L +   G LPFG +FIEL FIL+S+W  +FYY+FGF                    Y  LC ED  WWW++F  +GS +LY+F+YS+++  F    ++  +S+LL   YS IM++A    TGTIGF + ++ V  ++SS+ I+
Sbjct:  500 YLSILMGGILPFGAVFIELHFILTSLWDNQFYYIFGFLFIVLMILIVTSAEISIVMCYFQLCAEDHHWWWRSFLTAGSSSLYMFIYSVSF--FRYLGITKFISSLLDFSYSFIMSLAFAALTGTIGFYSCYFLVRKIYSSIHIN 641          
The following BLAST results are available for this feature:
BLAST of CF833460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
TM9S4_RAT1.026e-2940.88Transmembrane 9 superfamily member 4 OS=Rattus nor... [more]
TM9S4_PONAB1.026e-2940.88Transmembrane 9 superfamily member 4 OS=Pongo abel... [more]
TM9S4_MOUSE1.026e-2940.88Transmembrane 9 superfamily member 4 OS=Mus muscul... [more]
TM9S4_HUMAN1.026e-2940.88Transmembrane 9 superfamily member 4 OS=Homo sapie... [more]
TM9S4_BOVIN1.026e-2940.88Transmembrane 9 superfamily member 4 OS=Bos taurus... [more]
TM9S2_MOUSE1.340e-2940.88Transmembrane 9 superfamily member 2 OS=Mus muscul... [more]
TM9S2_RAT1.750e-2940.88Transmembrane 9 superfamily member 2 OS=Rattus nor... [more]
TM9S2_PONAB1.750e-2940.25Transmembrane 9 superfamily member 2 OS=Pongo abel... [more]
TM9S2_HUMAN1.750e-2940.25Transmembrane 9 superfamily member 2 OS=Homo sapie... [more]
PHG1A_DICDI1.061e-2638.89Putative phagocytic receptor 1a OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03K13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833460 ID=CF833460; Name=CF833460; organism=Citrus sinensis; type=EST; length=689bp
CCAGATTCCCAGCCATATTACTGCTCGCAAGTATCCATCATGGCTTCTTG
TGCCCTTTGCAGGAACCCTTCCGTTTGGAACCCTCTTTATAGAACTTTTC
TTCATTCTTTCTAGCATTTGGCTAGGAAGGTTCTATTATGTCTTTGGTTT
TCTGCTGATAGTTCTTTTGTTGCTGGTTGTTGTTTGCGCTGAAGTGTCTG
TGGTCCTAACATACATGCATCTTTGTGTGGAGGATTGGCGTTGGTGGTGG
AAGGCTTTCTTTGCTTCAGGATCAGTTGCACTGTATGTGTTCCTGTACTC
TATCAACTATTTGGTATTTGACCTGCAGAGTTTGAGTGGACCCGTGTCTG
CTCTACTATATCTTGGTTATTCATTAATCATGGCAGTCGCAATCATGTTG
GCAACCGGCACCATTGGCTTCCTTACGTCTTTTTACTTCGTCCATTACCT
TTTCTCGTCTGTAAAGATTGACTGAAAAATTATGTTTGTGAATCAATCTT
CATCGACCAGGTAGAGAAGACTCCAGTACGTTAGGAAGAGGGAGTTTTCT
TGGTTCAGCCTTCCTTTTGATAGATTTAGAGATTATGATATGCTGTCTCA
TTCCCCTATATTGTTGTTCTTGTTTCTCCTATTTTACTAGTTTTGAGCAT
CATTTTGGATTACCTATCTCAAGTTACATTGACTGTTCT
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