CF833460
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF833460 vs. ExPASy Swiss-Prot
Match: TM9S4_RAT (Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.026e-29 Identity = 65/159 (40.88%), Postives = 92/159 (57.86%), Query Frame = 2 Query: 2 QIPSHITARKY--PSWLLVPFAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 472 QIP I +++ ++ + AG LPFG +FIELFFI S+IW +FYY+FGF Y LC ED+RWWW+ F SG A YV +Y+I Y V L + + +LLY GY+ +M ++ L TGTIGF ++ FV ++++VKID Sbjct: 486 QIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643
BLAST of CF833460 vs. ExPASy Swiss-Prot
Match: TM9S4_PONAB (Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.026e-29 Identity = 65/159 (40.88%), Postives = 92/159 (57.86%), Query Frame = 2 Query: 2 QIPSHITARKY--PSWLLVPFAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 472 QIP I +++ ++ + AG LPFG +FIELFFI S+IW +FYY+FGF Y LC ED+RWWW+ F SG A YV +Y+I Y V L + + +LLY GY+ +M ++ L TGTIGF ++ FV ++++VKID Sbjct: 485 QIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642
BLAST of CF833460 vs. ExPASy Swiss-Prot
Match: TM9S4_MOUSE (Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.026e-29 Identity = 65/159 (40.88%), Postives = 92/159 (57.86%), Query Frame = 2 Query: 2 QIPSHITARKY--PSWLLVPFAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 472 QIP I +++ ++ + AG LPFG +FIELFFI S+IW +FYY+FGF Y LC ED+RWWW+ F SG A YV +Y+I Y V L + + +LLY GY+ +M ++ L TGTIGF ++ FV ++++VKID Sbjct: 486 QIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643
BLAST of CF833460 vs. ExPASy Swiss-Prot
Match: TM9S4_HUMAN (Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2) HSP 1 Score: 130.183 bits (326), Expect = 1.026e-29 Identity = 65/159 (40.88%), Postives = 92/159 (57.86%), Query Frame = 2 Query: 2 QIPSHITARKY--PSWLLVPFAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 472 QIP I +++ ++ + AG LPFG +FIELFFI S+IW +FYY+FGF Y LC ED+RWWW+ F SG A YV +Y+I Y V L + + +LLY GY+ +M ++ L TGTIGF ++ FV ++++VKID Sbjct: 485 QIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642
BLAST of CF833460 vs. ExPASy Swiss-Prot
Match: TM9S4_BOVIN (Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2) HSP 1 Score: 130.183 bits (326), Expect = 1.026e-29 Identity = 65/159 (40.88%), Postives = 92/159 (57.86%), Query Frame = 2 Query: 2 QIPSHITARKY--PSWLLVPFAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 472 QIP I +++ ++ + AG LPFG +FIELFFI S+IW +FYY+FGF Y LC ED+RWWW+ F SG A YV +Y+I Y V L + + +LLY GY+ +M ++ L TGTIGF ++ FV ++++VKID Sbjct: 485 QIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642
BLAST of CF833460 vs. ExPASy Swiss-Prot
Match: TM9S2_MOUSE (Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.340e-29 Identity = 65/159 (40.88%), Postives = 91/159 (57.23%), Query Frame = 2 Query: 2 QIPSHITARKYPSWLL--VPFAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 472 QIP I + + + L + G LPFG +FI+LFFIL+SIW + YY+FGF Y HLC ED+ W W++F SG A+Y +Y+I+Y LQ ++G S +LY GY++IM + L TGTIGF F+FV ++S VK+D Sbjct: 505 QIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAIHYFFSKLQ-ITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 662
BLAST of CF833460 vs. ExPASy Swiss-Prot
Match: TM9S2_RAT (Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.750e-29 Identity = 65/159 (40.88%), Postives = 91/159 (57.23%), Query Frame = 2 Query: 2 QIPSHITARKYPSWLL--VPFAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 472 QIP I + + + L + G LPFG +FI+LFFIL+SIW + YY+FGF Y HLC ED+ W W++F SG A+Y +Y+I+Y LQ ++G S +LY GY++IM + L TGTIGF F+FV ++S VK+D Sbjct: 506 QIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLVYAIHYFFSKLQ-ITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
BLAST of CF833460 vs. ExPASy Swiss-Prot
Match: TM9S2_PONAB (Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.750e-29 Identity = 64/159 (40.25%), Postives = 91/159 (57.23%), Query Frame = 2 Query: 2 QIPSHITARKYPSWLL--VPFAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 472 QIP I + + + L + G LPFG +FI+LFFIL+SIW + YY+FGF Y HLC ED+ W W++F SG A+Y +Y+++Y LQ ++G S +LY GY++IM + L TGTIGF F+FV ++S VK+D Sbjct: 506 QIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQ-ITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
BLAST of CF833460 vs. ExPASy Swiss-Prot
Match: TM9S2_HUMAN (Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.750e-29 Identity = 64/159 (40.25%), Postives = 91/159 (57.23%), Query Frame = 2 Query: 2 QIPSHITARKYPSWLL--VPFAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 472 QIP I + + + L + G LPFG +FI+LFFIL+SIW + YY+FGF Y HLC ED+ W W++F SG A+Y +Y+++Y LQ ++G S +LY GY++IM + L TGTIGF F+FV ++S VK+D Sbjct: 506 QIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQ-ITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
BLAST of CF833460 vs. ExPASy Swiss-Prot
Match: PHG1A_DICDI (Putative phagocytic receptor 1a OS=Dictyostelium discoideum GN=phg1a PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.061e-26 Identity = 56/144 (38.89%), Postives = 85/144 (59.03%), Query Frame = 2 Query: 41 WLLVPFAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 472 +L + G LPFG +FIEL FIL+S+W +FYY+FGF Y LC ED WWW++F +GS +LY+F+YS+++ F ++ +S+LL YS IM++A TGTIGF + ++ V ++SS+ I+ Sbjct: 500 YLSILMGGILPFGAVFIELHFILTSLWDNQFYYIFGFLFIVLMILIVTSAEISIVMCYFQLCAEDHHWWWRSFLTAGSSSLYMFIYSVSF--FRYLGITKFISSLLDFSYSFIMSLAFAALTGTIGFYSCYFLVRKIYSSIHIN 641 The following BLAST results are available for this feature:
BLAST of CF833460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 21
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Sequences
The
following sequences are available for this feature:
EST sequence >CF833460 ID=CF833460; Name=CF833460; organism=Citrus sinensis; type=EST; length=689bpback to top |