CF833461

Overview
NameCF833461
Unique NameCF833461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833461 vs. ExPASy Swiss-Prot
Match: TM9S4_RAT (Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.741e-31
Identity = 66/157 (42.04%), Postives = 95/157 (60.51%), Query Frame = -2
Query:  318 PREIPARKY--PSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 782
            PR+IP +++    ++ +L AG LPFG +FIELFFI S+IW  +FYY+FGF                  + Y  LC ED+RWWW+ F  SG  A YV +Y+I Y V  L  +   + +LLY GY+ +M ++  L TGTIGF  ++ FV  ++++VKID
Sbjct:  488 PRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643          
BLAST of CF833461 vs. ExPASy Swiss-Prot
Match: TM9S4_PONAB (Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.741e-31
Identity = 66/157 (42.04%), Postives = 95/157 (60.51%), Query Frame = -2
Query:  318 PREIPARKY--PSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 782
            PR+IP +++    ++ +L AG LPFG +FIELFFI S+IW  +FYY+FGF                  + Y  LC ED+RWWW+ F  SG  A YV +Y+I Y V  L  +   + +LLY GY+ +M ++  L TGTIGF  ++ FV  ++++VKID
Sbjct:  487 PRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642          
BLAST of CF833461 vs. ExPASy Swiss-Prot
Match: TM9S4_MOUSE (Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.741e-31
Identity = 66/157 (42.04%), Postives = 95/157 (60.51%), Query Frame = -2
Query:  318 PREIPARKY--PSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 782
            PR+IP +++    ++ +L AG LPFG +FIELFFI S+IW  +FYY+FGF                  + Y  LC ED+RWWW+ F  SG  A YV +Y+I Y V  L  +   + +LLY GY+ +M ++  L TGTIGF  ++ FV  ++++VKID
Sbjct:  488 PRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643          
BLAST of CF833461 vs. ExPASy Swiss-Prot
Match: TM9S4_HUMAN (Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 6.741e-31
Identity = 66/157 (42.04%), Postives = 95/157 (60.51%), Query Frame = -2
Query:  318 PREIPARKY--PSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 782
            PR+IP +++    ++ +L AG LPFG +FIELFFI S+IW  +FYY+FGF                  + Y  LC ED+RWWW+ F  SG  A YV +Y+I Y V  L  +   + +LLY GY+ +M ++  L TGTIGF  ++ FV  ++++VKID
Sbjct:  487 PRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642          
BLAST of CF833461 vs. ExPASy Swiss-Prot
Match: TM9S4_BOVIN (Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 6.741e-31
Identity = 66/157 (42.04%), Postives = 95/157 (60.51%), Query Frame = -2
Query:  318 PREIPARKY--PSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 782
            PR+IP +++    ++ +L AG LPFG +FIELFFI S+IW  +FYY+FGF                  + Y  LC ED+RWWW+ F  SG  A YV +Y+I Y V  L  +   + +LLY GY+ +M ++  L TGTIGF  ++ FV  ++++VKID
Sbjct:  487 PRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642          
BLAST of CF833461 vs. ExPASy Swiss-Prot
Match: TM9S2_MOUSE (Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.502e-30
Identity = 66/157 (42.04%), Postives = 94/157 (59.87%), Query Frame = -2
Query:  318 PREIPARKYPSWLL--VLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 782
            PR+IP + + +  L  ++  G LPFG +FI+LFFIL+SIW  + YY+FGF                  L Y HLC ED+ W W++F  SG  A+Y  +Y+I+Y    LQ ++G  S +LY GY++IM +   L TGTIGF   F+FV  ++S VK+D
Sbjct:  507 PRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAIHYFFSKLQ-ITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 662          
BLAST of CF833461 vs. ExPASy Swiss-Prot
Match: TM9S2_RAT (Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.961e-30
Identity = 66/157 (42.04%), Postives = 94/157 (59.87%), Query Frame = -2
Query:  318 PREIPARKYPSWLL--VLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 782
            PR+IP + + +  L  ++  G LPFG +FI+LFFIL+SIW  + YY+FGF                  L Y HLC ED+ W W++F  SG  A+Y  +Y+I+Y    LQ ++G  S +LY GY++IM +   L TGTIGF   F+FV  ++S VK+D
Sbjct:  508 PRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLVYAIHYFFSKLQ-ITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663          
BLAST of CF833461 vs. ExPASy Swiss-Prot
Match: TM9S2_PONAB (Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.961e-30
Identity = 65/157 (41.40%), Postives = 94/157 (59.87%), Query Frame = -2
Query:  318 PREIPARKYPSWLL--VLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 782
            PR+IP + + +  L  ++  G LPFG +FI+LFFIL+SIW  + YY+FGF                  L Y HLC ED+ W W++F  SG  A+Y  +Y+++Y    LQ ++G  S +LY GY++IM +   L TGTIGF   F+FV  ++S VK+D
Sbjct:  508 PRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQ-ITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663          
BLAST of CF833461 vs. ExPASy Swiss-Prot
Match: TM9S2_HUMAN (Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.961e-30
Identity = 65/157 (41.40%), Postives = 94/157 (59.87%), Query Frame = -2
Query:  318 PREIPARKYPSWLL--VLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 782
            PR+IP + + +  L  ++  G LPFG +FI+LFFIL+SIW  + YY+FGF                  L Y HLC ED+ W W++F  SG  A+Y  +Y+++Y    LQ ++G  S +LY GY++IM +   L TGTIGF   F+FV  ++S VK+D
Sbjct:  508 PRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQ-ITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663          
BLAST of CF833461 vs. ExPASy Swiss-Prot
Match: PHG1A_DICDI (Putative phagocytic receptor 1a OS=Dictyostelium discoideum GN=phg1a PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.111e-28
Identity = 60/157 (38.22%), Postives = 94/157 (59.87%), Query Frame = -2
Query:  318 PREIPARKY--PSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 782
            PR++P + +    +L +L  G LPFG +FIEL FIL+S+W  +FYY+FGF                  + Y  LC ED  WWW++F  +GS +LY+F+YS+++  F    ++  +S+LL   YS IM++A    TGTIGF + ++ V  ++SS+ I+
Sbjct:  487 PRQVPDQIWYMNPYLSILMGGILPFGAVFIELHFILTSLWDNQFYYIFGFLFIVLMILIVTSAEISIVMCYFQLCAEDHHWWWRSFLTAGSSSLYMFIYSVSF--FRYLGITKFISSLLDFSYSFIMSLAFAALTGTIGFYSCYFLVRKIYSSIHIN 641          
The following BLAST results are available for this feature:
BLAST of CF833461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
TM9S4_RAT6.741e-3142.04Transmembrane 9 superfamily member 4 OS=Rattus nor... [more]
TM9S4_PONAB6.741e-3142.04Transmembrane 9 superfamily member 4 OS=Pongo abel... [more]
TM9S4_MOUSE6.741e-3142.04Transmembrane 9 superfamily member 4 OS=Mus muscul... [more]
TM9S4_HUMAN6.741e-3142.04Transmembrane 9 superfamily member 4 OS=Homo sapie... [more]
TM9S4_BOVIN6.741e-3142.04Transmembrane 9 superfamily member 4 OS=Bos taurus... [more]
TM9S2_MOUSE1.502e-3042.04Transmembrane 9 superfamily member 2 OS=Mus muscul... [more]
TM9S2_RAT1.961e-3042.04Transmembrane 9 superfamily member 2 OS=Rattus nor... [more]
TM9S2_PONAB1.961e-3041.40Transmembrane 9 superfamily member 2 OS=Pongo abel... [more]
TM9S2_HUMAN1.961e-3041.40Transmembrane 9 superfamily member 2 OS=Homo sapie... [more]
PHG1A_DICDI9.111e-2838.22Putative phagocytic receptor 1a OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03K14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833461 ID=CF833461; Name=CF833461; organism=Citrus sinensis; type=EST; length=783bp
TTTTTTTTTTTTTTTTTAAGAAAAAGACTATTTAAATTCTCTCCATTGAT
AAAGCTATCGAAAGTACAAGGAGAGCAAAACCAACCATTTACAATTTTGT
AGAACAGTCAATGTAAACTGAGATAGGTAATCCAAAATGATGCTCAAAAC
TAGTAAAATAGGAAAAACAAGAACAACAATATAGGGGAATGAGACAGCAT
ATCATAATCTCTAAATCTATCAAAAGGAAGGCTGAACCAAGAAAACTCCC
TCTTCCTAACGTACTGGAGTCTTCTCTACCTGGTCGATGAAGATTGATTC
ACAAACATAATTTTTCAGTCAATCTTTACAGACGAGAAAAGGTAATGGAC
GAAGTAAAAAGACGTAAGGAAGCCAATGGTGCCGGTTGCCAACATGATTG
CGACTGCCATGATTAATGAATAACCAAGATATAGTAGAGCAGACACGGGT
CCACTCAAACTCTGCAGGTCAAATACCAAATAGTTGATAGAGTACAGGAA
CACATACAGTGCAACTGATCCTGAAGCAAAGAAAGCCTTCCACCACCAAC
GCCAATCCTCCACACAAAGATGCATGTATGTTAGGACCACAGACACTTCA
GCGCAAACAACAACCAGCAACAAAAGAACTATCAGCAGAAAACCAAAGAC
ATAATAGAACCTTCCTAGCCAAATGCTAGAAAGAATGAAGAAAAGTTCTA
TAAAGAGGGTTCCAAACGGAAGGGTTCCTGCACCAAGCACAAGAAGCCAT
GATGGATACTTGCGAGCAGGAATTTCCCTGGGA
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