CF833461
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF833461 vs. ExPASy Swiss-Prot
Match: TM9S4_RAT (Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 6.741e-31 Identity = 66/157 (42.04%), Postives = 95/157 (60.51%), Query Frame = -2 Query: 318 PREIPARKY--PSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 782 PR+IP +++ ++ +L AG LPFG +FIELFFI S+IW +FYY+FGF + Y LC ED+RWWW+ F SG A YV +Y+I Y V L + + +LLY GY+ +M ++ L TGTIGF ++ FV ++++VKID Sbjct: 488 PRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643
BLAST of CF833461 vs. ExPASy Swiss-Prot
Match: TM9S4_PONAB (Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 6.741e-31 Identity = 66/157 (42.04%), Postives = 95/157 (60.51%), Query Frame = -2 Query: 318 PREIPARKY--PSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 782 PR+IP +++ ++ +L AG LPFG +FIELFFI S+IW +FYY+FGF + Y LC ED+RWWW+ F SG A YV +Y+I Y V L + + +LLY GY+ +M ++ L TGTIGF ++ FV ++++VKID Sbjct: 487 PRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642
BLAST of CF833461 vs. ExPASy Swiss-Prot
Match: TM9S4_MOUSE (Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 6.741e-31 Identity = 66/157 (42.04%), Postives = 95/157 (60.51%), Query Frame = -2 Query: 318 PREIPARKY--PSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 782 PR+IP +++ ++ +L AG LPFG +FIELFFI S+IW +FYY+FGF + Y LC ED+RWWW+ F SG A YV +Y+I Y V L + + +LLY GY+ +M ++ L TGTIGF ++ FV ++++VKID Sbjct: 488 PRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643
BLAST of CF833461 vs. ExPASy Swiss-Prot
Match: TM9S4_HUMAN (Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2) HSP 1 Score: 134.42 bits (337), Expect = 6.741e-31 Identity = 66/157 (42.04%), Postives = 95/157 (60.51%), Query Frame = -2 Query: 318 PREIPARKY--PSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 782 PR+IP +++ ++ +L AG LPFG +FIELFFI S+IW +FYY+FGF + Y LC ED+RWWW+ F SG A YV +Y+I Y V L + + +LLY GY+ +M ++ L TGTIGF ++ FV ++++VKID Sbjct: 487 PRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642
BLAST of CF833461 vs. ExPASy Swiss-Prot
Match: TM9S4_BOVIN (Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2) HSP 1 Score: 134.42 bits (337), Expect = 6.741e-31 Identity = 66/157 (42.04%), Postives = 95/157 (60.51%), Query Frame = -2 Query: 318 PREIPARKY--PSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 782 PR+IP +++ ++ +L AG LPFG +FIELFFI S+IW +FYY+FGF + Y LC ED+RWWW+ F SG A YV +Y+I Y V L + + +LLY GY+ +M ++ L TGTIGF ++ FV ++++VKID Sbjct: 487 PRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642
BLAST of CF833461 vs. ExPASy Swiss-Prot
Match: TM9S2_MOUSE (Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.502e-30 Identity = 66/157 (42.04%), Postives = 94/157 (59.87%), Query Frame = -2 Query: 318 PREIPARKYPSWLL--VLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 782 PR+IP + + + L ++ G LPFG +FI+LFFIL+SIW + YY+FGF L Y HLC ED+ W W++F SG A+Y +Y+I+Y LQ ++G S +LY GY++IM + L TGTIGF F+FV ++S VK+D Sbjct: 507 PRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAIHYFFSKLQ-ITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 662
BLAST of CF833461 vs. ExPASy Swiss-Prot
Match: TM9S2_RAT (Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.961e-30 Identity = 66/157 (42.04%), Postives = 94/157 (59.87%), Query Frame = -2 Query: 318 PREIPARKYPSWLL--VLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 782 PR+IP + + + L ++ G LPFG +FI+LFFIL+SIW + YY+FGF L Y HLC ED+ W W++F SG A+Y +Y+I+Y LQ ++G S +LY GY++IM + L TGTIGF F+FV ++S VK+D Sbjct: 508 PRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLVYAIHYFFSKLQ-ITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
BLAST of CF833461 vs. ExPASy Swiss-Prot
Match: TM9S2_PONAB (Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.961e-30 Identity = 65/157 (41.40%), Postives = 94/157 (59.87%), Query Frame = -2 Query: 318 PREIPARKYPSWLL--VLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 782 PR+IP + + + L ++ G LPFG +FI+LFFIL+SIW + YY+FGF L Y HLC ED+ W W++F SG A+Y +Y+++Y LQ ++G S +LY GY++IM + L TGTIGF F+FV ++S VK+D Sbjct: 508 PRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQ-ITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
BLAST of CF833461 vs. ExPASy Swiss-Prot
Match: TM9S2_HUMAN (Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.961e-30 Identity = 65/157 (41.40%), Postives = 94/157 (59.87%), Query Frame = -2 Query: 318 PREIPARKYPSWLL--VLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 782 PR+IP + + + L ++ G LPFG +FI+LFFIL+SIW + YY+FGF L Y HLC ED+ W W++F SG A+Y +Y+++Y LQ ++G S +LY GY++IM + L TGTIGF F+FV ++S VK+D Sbjct: 508 PRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQ-ITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
BLAST of CF833461 vs. ExPASy Swiss-Prot
Match: PHG1A_DICDI (Putative phagocytic receptor 1a OS=Dictyostelium discoideum GN=phg1a PE=2 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 9.111e-28 Identity = 60/157 (38.22%), Postives = 94/157 (59.87%), Query Frame = -2 Query: 318 PREIPARKY--PSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 782 PR++P + + +L +L G LPFG +FIEL FIL+S+W +FYY+FGF + Y LC ED WWW++F +GS +LY+F+YS+++ F ++ +S+LL YS IM++A TGTIGF + ++ V ++SS+ I+ Sbjct: 487 PRQVPDQIWYMNPYLSILMGGILPFGAVFIELHFILTSLWDNQFYYIFGFLFIVLMILIVTSAEISIVMCYFQLCAEDHHWWWRSFLTAGSSSLYMFIYSVSF--FRYLGITKFISSLLDFSYSFIMSLAFAALTGTIGFYSCYFLVRKIYSSIHIN 641 The following BLAST results are available for this feature:
BLAST of CF833461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
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Sequences
The
following sequences are available for this feature:
EST sequence >CF833461 ID=CF833461; Name=CF833461; organism=Citrus sinensis; type=EST; length=783bpback to top |