CF833462
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF833462 vs. ExPASy Swiss-Prot
Match: TM9S4_RAT (Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 4.344e-31 Identity = 67/159 (42.14%), Postives = 94/159 (59.12%), Query Frame = 2 Query: 2 QIPSDIPARKY--PSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 472 QIP IP +++ ++ +L AG LPFG +FIELFFI S+IW +FYY+FGF Y LC ED+RWWW+ F SG A YV +Y+I Y V L + + +LLY GY+ +M ++ L TGTIGF ++ FV ++++VKID Sbjct: 486 QIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643
BLAST of CF833462 vs. ExPASy Swiss-Prot
Match: TM9S4_PONAB (Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 4.344e-31 Identity = 67/159 (42.14%), Postives = 94/159 (59.12%), Query Frame = 2 Query: 2 QIPSDIPARKY--PSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 472 QIP IP +++ ++ +L AG LPFG +FIELFFI S+IW +FYY+FGF Y LC ED+RWWW+ F SG A YV +Y+I Y V L + + +LLY GY+ +M ++ L TGTIGF ++ FV ++++VKID Sbjct: 485 QIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642
BLAST of CF833462 vs. ExPASy Swiss-Prot
Match: TM9S4_MOUSE (Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 4.344e-31 Identity = 67/159 (42.14%), Postives = 94/159 (59.12%), Query Frame = 2 Query: 2 QIPSDIPARKY--PSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 472 QIP IP +++ ++ +L AG LPFG +FIELFFI S+IW +FYY+FGF Y LC ED+RWWW+ F SG A YV +Y+I Y V L + + +LLY GY+ +M ++ L TGTIGF ++ FV ++++VKID Sbjct: 486 QIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643
BLAST of CF833462 vs. ExPASy Swiss-Prot
Match: TM9S4_HUMAN (Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2) HSP 1 Score: 134.806 bits (338), Expect = 4.344e-31 Identity = 67/159 (42.14%), Postives = 94/159 (59.12%), Query Frame = 2 Query: 2 QIPSDIPARKY--PSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 472 QIP IP +++ ++ +L AG LPFG +FIELFFI S+IW +FYY+FGF Y LC ED+RWWW+ F SG A YV +Y+I Y V L + + +LLY GY+ +M ++ L TGTIGF ++ FV ++++VKID Sbjct: 485 QIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642
BLAST of CF833462 vs. ExPASy Swiss-Prot
Match: TM9S4_BOVIN (Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2) HSP 1 Score: 134.806 bits (338), Expect = 4.344e-31 Identity = 67/159 (42.14%), Postives = 94/159 (59.12%), Query Frame = 2 Query: 2 QIPSDIPARKY--PSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 472 QIP IP +++ ++ +L AG LPFG +FIELFFI S+IW +FYY+FGF Y LC ED+RWWW+ F SG A YV +Y+I Y V L + + +LLY GY+ +M ++ L TGTIGF ++ FV ++++VKID Sbjct: 485 QIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642
BLAST of CF833462 vs. ExPASy Swiss-Prot
Match: TM9S2_MOUSE (Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 9.677e-31 Identity = 66/159 (41.51%), Postives = 93/159 (58.49%), Query Frame = 2 Query: 2 QIPSDIPARKYPSWLL--VLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 472 QIP IP + + + L ++ G LPFG +FI+LFFIL+SIW + YY+FGF Y HLC ED+ W W++F SG A+Y +Y+I+Y LQ ++G S +LY GY++IM + L TGTIGF F+FV ++S VK+D Sbjct: 505 QIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAIHYFFSKLQ-ITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 662
BLAST of CF833462 vs. ExPASy Swiss-Prot
Match: TM9S2_RAT (Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.264e-30 Identity = 66/159 (41.51%), Postives = 93/159 (58.49%), Query Frame = 2 Query: 2 QIPSDIPARKYPSWLL--VLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 472 QIP IP + + + L ++ G LPFG +FI+LFFIL+SIW + YY+FGF Y HLC ED+ W W++F SG A+Y +Y+I+Y LQ ++G S +LY GY++IM + L TGTIGF F+FV ++S VK+D Sbjct: 506 QIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLVYAIHYFFSKLQ-ITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
BLAST of CF833462 vs. ExPASy Swiss-Prot
Match: TM9S2_PONAB (Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.264e-30 Identity = 65/159 (40.88%), Postives = 93/159 (58.49%), Query Frame = 2 Query: 2 QIPSDIPARKYPSWLL--VLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 472 QIP IP + + + L ++ G LPFG +FI+LFFIL+SIW + YY+FGF Y HLC ED+ W W++F SG A+Y +Y+++Y LQ ++G S +LY GY++IM + L TGTIGF F+FV ++S VK+D Sbjct: 506 QIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQ-ITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
BLAST of CF833462 vs. ExPASy Swiss-Prot
Match: TM9S2_HUMAN (Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.264e-30 Identity = 65/159 (40.88%), Postives = 93/159 (58.49%), Query Frame = 2 Query: 2 QIPSDIPARKYPSWLL--VLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 472 QIP IP + + + L ++ G LPFG +FI+LFFIL+SIW + YY+FGF Y HLC ED+ W W++F SG A+Y +Y+++Y LQ ++G S +LY GY++IM + L TGTIGF F+FV ++S VK+D Sbjct: 506 QIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQ-ITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
BLAST of CF833462 vs. ExPASy Swiss-Prot
Match: PHG1A_DICDI (Putative phagocytic receptor 1a OS=Dictyostelium discoideum GN=phg1a PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.871e-28 Identity = 61/159 (38.36%), Postives = 93/159 (58.49%), Query Frame = 2 Query: 2 QIPSDIPARKY--PSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 472 QIP +P + + +L +L G LPFG +FIEL FIL+S+W +FYY+FGF Y LC ED WWW++F +GS +LY+F+YS+++ F ++ +S+LL YS IM++A TGTIGF + ++ V ++SS+ I+ Sbjct: 485 QIPRQVPDQIWYMNPYLSILMGGILPFGAVFIELHFILTSLWDNQFYYIFGFLFIVLMILIVTSAEISIVMCYFQLCAEDHHWWWRSFLTAGSSSLYMFIYSVSF--FRYLGITKFISSLLDFSYSFIMSLAFAALTGTIGFYSCYFLVRKIYSSIHIN 641 The following BLAST results are available for this feature:
BLAST of CF833462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 21
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Sequences
The
following sequences are available for this feature:
EST sequence >CF833462 ID=CF833462; Name=CF833462; organism=Citrus sinensis; type=EST; length=705bpback to top |