CF833463
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF833463 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1) HSP 1 Score: 229.565 bits (584), Expect = 1.766e-59 Identity = 124/182 (68.13%), Postives = 132/182 (72.53%), Query Frame = -2 Query: 305 KAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 850 KAFRNIPG LAPGGHLGRF+VWTKSAFEKLD IYG FDK SEKK GYVLPRSKMVNADLARIINSDEVQSVV PI+ KRA PYAKTARRMSLLAEA+RV KPI+KEEA+ IK+AGKAWYQTMISDSDYTEF+NF+KWLGVSQ Sbjct: 227 KAFRNIPGIDIINVERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFDKVSEKKNGYVLPRSKMVNADLARIINSDEVQSVVSPIQEGSKRAPLKKNPLRILNTMLKLNPYAKTARRMSLLAEAERVKAKKEKLDKKRKPISKEEASTIKAAGKAWYQTMISDSDYTEFDNFTKWLGVSQ 408
BLAST of CF833463 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1) HSP 1 Score: 224.942 bits (572), Expect = 4.350e-58 Identity = 117/182 (64.29%), Postives = 132/182 (72.53%), Query Frame = -2 Query: 305 KAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 850 KAFRN+PG LAPGGHLGRF++WTKSAFEKL+ IYG F+K SEKKKGYVLPR+KMVNADLARIINSDE+QSVV PIK + KRA PYAKTA+RMSLLAEAQRV K +TKEEA AIK+AGK+WY+TMISDSDYTEF+NF+KWLG SQ Sbjct: 225 KAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKLAKKRKTVTKEEALAIKAAGKSWYKTMISDSDYTEFDNFTKWLGASQ 406
BLAST of CF833463 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2) HSP 1 Score: 223.402 bits (568), Expect = 1.266e-57 Identity = 119/182 (65.38%), Postives = 130/182 (71.43%), Query Frame = -2 Query: 305 KAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 850 KAFRN+PG LAPGGHLGRF++WTKSAFEKL+ IYG F+K SEKKKGYVLPR+KMVNADLARIINSDEVQSVV PIK KRA PYAKTA+RMSLLAEA RV K +TKEEA AIK+AGKAWYQTMISDSDYTEF+NF+KWLG SQ Sbjct: 226 KAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKKEKLEKKRKVVTKEEAQAIKAAGKAWYQTMISDSDYTEFDNFTKWLGASQ 407
BLAST of CF833463 vs. ExPASy Swiss-Prot
Match: RL4_DICDI (60S ribosomal protein L4 OS=Dictyostelium discoideum GN=rpl4 PE=1 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 7.749e-23 Identity = 52/93 (55.91%), Postives = 63/93 (67.74%), Query Frame = -2 Query: 572 KAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKR 850 +A RNIPG LAPGGHLGRFI+WTKSAFE+LD +G F K S +KKGY LPR + NAD+ R++NSDE+Q+ VR K VKR Sbjct: 218 QALRNIPGVEVANVSRLNLLKLAPGGHLGRFIIWTKSAFEQLDSTFGTFAKSSAQKKGYTLPRPMIANADIVRLVNSDEIQAAVRASKVVVKR 310
BLAST of CF833463 vs. ExPASy Swiss-Prot
Match: RL4B_XENLA (60S ribosomal protein L4-B (Fragment) OS=Xenopus laevis GN=rpl4-B PE=2 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.461e-21 Identity = 55/129 (42.64%), Postives = 72/129 (55.81%), Query Frame = -2 Query: 464 KAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRV 850 KAFRNIPG LAPGGH+GRF +WT+SAF KLD++YG + K ++ K Y LP KM N DL RI+ S E+Q +R +VKR PYAKTARR ++L + + + Sbjct: 218 KAFRNIPGITLLNVSKLNLLRLAPGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENI 346
BLAST of CF833463 vs. ExPASy Swiss-Prot
Match: RL4A_XENLA (60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-A PE=2 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.461e-21 Identity = 55/129 (42.64%), Postives = 72/129 (55.81%), Query Frame = -2 Query: 464 KAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRV 850 KAFRNIPG LAPGGH+GRF +WT+SAF KLD++YG + K ++ K Y LP KM N DL RI+ S E+Q +R +VKR PYAKTARR ++L + + + Sbjct: 223 KAFRNIPGITLLNVSKLNLLRLAPGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENI 351
BLAST of CF833463 vs. ExPASy Swiss-Prot
Match: RL4_PONAB (60S ribosomal protein L4 OS=Pongo abelii GN=RPL4 PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.493e-21 Identity = 54/127 (42.52%), Postives = 72/127 (56.69%), Query Frame = -2 Query: 470 KAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQ 850 KAFRNIPG LAPGGH+GRF +WT+SAF KLDE+YG + K + K Y LP KM+N DL+RI+ S E+Q +R + ++ R PYAKT RR ++L +A+ Sbjct: 219 KAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345
BLAST of CF833463 vs. ExPASy Swiss-Prot
Match: RL4_HUMAN (60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5) HSP 1 Score: 102.834 bits (255), Expect = 2.493e-21 Identity = 54/127 (42.52%), Postives = 72/127 (56.69%), Query Frame = -2 Query: 470 KAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQ 850 KAFRNIPG LAPGGH+GRF +WT+SAF KLDE+YG + K + K Y LP KM+N DL+RI+ S E+Q +R + ++ R PYAKT RR ++L +A+ Sbjct: 219 KAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345
BLAST of CF833463 vs. ExPASy Swiss-Prot
Match: RL4_RAT (60S ribosomal protein L4 OS=Rattus norvegicus GN=Rpl4 PE=1 SV=3) HSP 1 Score: 102.449 bits (254), Expect = 3.256e-21 Identity = 61/157 (38.85%), Postives = 81/157 (51.59%), Query Frame = -2 Query: 380 KAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKA 850 KAFRNIPG LAPGGH+GRF +WT+SAF KLDE+YG + K + K Y LP KM+N DL+RI+ S E+Q +R + ++ R PYAKT RR ++L +A+ + K EAAA A K+ Sbjct: 219 KAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARN----------HKLRVKKLEAAAAALAAKS 365
BLAST of CF833463 vs. ExPASy Swiss-Prot
Match: RL4_MOUSE (60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 PE=1 SV=3) HSP 1 Score: 102.064 bits (253), Expect = 4.252e-21 Identity = 54/127 (42.52%), Postives = 72/127 (56.69%), Query Frame = -2 Query: 470 KAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQ 850 KAFRNIPG LAPGGH+GRF +WT+SAF KLDE+YG + K + K Y LP KM+N DL+RI+ S E+Q +R + ++ R PYAKT RR ++L +A+ Sbjct: 219 KAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345 The following BLAST results are available for this feature:
BLAST of CF833463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
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Sequences
The
following sequences are available for this feature:
EST sequence >CF833463 ID=CF833463; Name=CF833463; organism=Citrus sinensis; type=EST; length=851bpback to top |