CF833463

Overview
NameCF833463
Unique NameCF833463
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833463 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.766e-59
Identity = 124/182 (68.13%), Postives = 132/182 (72.53%), Query Frame = -2
Query:  305 KAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 850
            KAFRNIPG             LAPGGHLGRF+VWTKSAFEKLD IYG FDK SEKK GYVLPRSKMVNADLARIINSDEVQSVV PI+   KRA                 PYAKTARRMSLLAEA+RV           KPI+KEEA+ IK+AGKAWYQTMISDSDYTEF+NF+KWLGVSQ
Sbjct:  227 KAFRNIPGIDIINVERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFDKVSEKKNGYVLPRSKMVNADLARIINSDEVQSVVSPIQEGSKRAPLKKNPLRILNTMLKLNPYAKTARRMSLLAEAERVKAKKEKLDKKRKPISKEEASTIKAAGKAWYQTMISDSDYTEFDNFTKWLGVSQ 408          
BLAST of CF833463 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 4.350e-58
Identity = 117/182 (64.29%), Postives = 132/182 (72.53%), Query Frame = -2
Query:  305 KAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 850
            KAFRN+PG             LAPGGHLGRF++WTKSAFEKL+ IYG F+K SEKKKGYVLPR+KMVNADLARIINSDE+QSVV PIK + KRA                 PYAKTA+RMSLLAEAQRV           K +TKEEA AIK+AGK+WY+TMISDSDYTEF+NF+KWLG SQ
Sbjct:  225 KAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKLAKKRKTVTKEEALAIKAAGKSWYKTMISDSDYTEFDNFTKWLGASQ 406          
BLAST of CF833463 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 1.266e-57
Identity = 119/182 (65.38%), Postives = 130/182 (71.43%), Query Frame = -2
Query:  305 KAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 850
            KAFRN+PG             LAPGGHLGRF++WTKSAFEKL+ IYG F+K SEKKKGYVLPR+KMVNADLARIINSDEVQSVV PIK   KRA                 PYAKTA+RMSLLAEA RV           K +TKEEA AIK+AGKAWYQTMISDSDYTEF+NF+KWLG SQ
Sbjct:  226 KAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKKEKLEKKRKVVTKEEAQAIKAAGKAWYQTMISDSDYTEFDNFTKWLGASQ 407          
BLAST of CF833463 vs. ExPASy Swiss-Prot
Match: RL4_DICDI (60S ribosomal protein L4 OS=Dictyostelium discoideum GN=rpl4 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.749e-23
Identity = 52/93 (55.91%), Postives = 63/93 (67.74%), Query Frame = -2
Query:  572 KAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKR 850
            +A RNIPG             LAPGGHLGRFI+WTKSAFE+LD  +G F K S +KKGY LPR  + NAD+ R++NSDE+Q+ VR  K  VKR
Sbjct:  218 QALRNIPGVEVANVSRLNLLKLAPGGHLGRFIIWTKSAFEQLDSTFGTFAKSSAQKKGYTLPRPMIANADIVRLVNSDEIQAAVRASKVVVKR 310          
BLAST of CF833463 vs. ExPASy Swiss-Prot
Match: RL4B_XENLA (60S ribosomal protein L4-B (Fragment) OS=Xenopus laevis GN=rpl4-B PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.461e-21
Identity = 55/129 (42.64%), Postives = 72/129 (55.81%), Query Frame = -2
Query:  464 KAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRV 850
            KAFRNIPG             LAPGGH+GRF +WT+SAF KLD++YG + K ++ K  Y LP  KM N DL RI+ S E+Q  +R    +VKR                  PYAKTARR ++L + + +
Sbjct:  218 KAFRNIPGITLLNVSKLNLLRLAPGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENI 346          
BLAST of CF833463 vs. ExPASy Swiss-Prot
Match: RL4A_XENLA (60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-A PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.461e-21
Identity = 55/129 (42.64%), Postives = 72/129 (55.81%), Query Frame = -2
Query:  464 KAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRV 850
            KAFRNIPG             LAPGGH+GRF +WT+SAF KLD++YG + K ++ K  Y LP  KM N DL RI+ S E+Q  +R    +VKR                  PYAKTARR ++L + + +
Sbjct:  223 KAFRNIPGITLLNVSKLNLLRLAPGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENI 351          
BLAST of CF833463 vs. ExPASy Swiss-Prot
Match: RL4_PONAB (60S ribosomal protein L4 OS=Pongo abelii GN=RPL4 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.493e-21
Identity = 54/127 (42.52%), Postives = 72/127 (56.69%), Query Frame = -2
Query:  470 KAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQ 850
            KAFRNIPG             LAPGGH+GRF +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R                  PYAKT RR ++L +A+
Sbjct:  219 KAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345          
BLAST of CF833463 vs. ExPASy Swiss-Prot
Match: RL4_HUMAN (60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5)

HSP 1 Score: 102.834 bits (255), Expect = 2.493e-21
Identity = 54/127 (42.52%), Postives = 72/127 (56.69%), Query Frame = -2
Query:  470 KAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQ 850
            KAFRNIPG             LAPGGH+GRF +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R                  PYAKT RR ++L +A+
Sbjct:  219 KAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345          
BLAST of CF833463 vs. ExPASy Swiss-Prot
Match: RL4_RAT (60S ribosomal protein L4 OS=Rattus norvegicus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 3.256e-21
Identity = 61/157 (38.85%), Postives = 81/157 (51.59%), Query Frame = -2
Query:  380 KAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKA 850
            KAFRNIPG             LAPGGH+GRF +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R                  PYAKT RR ++L +A+               + K EAAA   A K+
Sbjct:  219 KAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARN----------HKLRVKKLEAAAAALAAKS 365          
BLAST of CF833463 vs. ExPASy Swiss-Prot
Match: RL4_MOUSE (60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 4.252e-21
Identity = 54/127 (42.52%), Postives = 72/127 (56.69%), Query Frame = -2
Query:  470 KAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQ 850
            KAFRNIPG             LAPGGH+GRF +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R                  PYAKT RR ++L +A+
Sbjct:  219 KAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345          
The following BLAST results are available for this feature:
BLAST of CF833463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RL4_PRUAR1.766e-5968.1360S ribosomal protein L4 OS=Prunus armeniaca GN=RP... [more]
RL4A_ARATH4.350e-5864.2960S ribosomal protein L4-1 OS=Arabidopsis thaliana... [more]
RL4B_ARATH1.266e-5765.3860S ribosomal protein L4-2 OS=Arabidopsis thaliana... [more]
RL4_DICDI7.749e-2355.9160S ribosomal protein L4 OS=Dictyostelium discoide... [more]
RL4B_XENLA1.461e-2142.6460S ribosomal protein L4-B (Fragment) OS=Xenopus l... [more]
RL4A_XENLA1.461e-2142.6460S ribosomal protein L4-A OS=Xenopus laevis GN=rp... [more]
RL4_PONAB2.493e-2142.5260S ribosomal protein L4 OS=Pongo abelii GN=RPL4 P... [more]
RL4_HUMAN2.493e-2142.5260S ribosomal protein L4 OS=Homo sapiens GN=RPL4 P... [more]
RL4_RAT3.256e-2138.8560S ribosomal protein L4 OS=Rattus norvegicus GN=R... [more]
RL4_MOUSE4.252e-2142.5260S ribosomal protein L4 OS=Mus musculus GN=Rpl4 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_03K16_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833463 ID=CF833463; Name=CF833463; organism=Citrus sinensis; type=EST; length=851bp
TTTTTTTTTTTTTTTTGATAAGAGCAGCATTATAATTTTTAAGTATAACT
ATTACCATTAAGACAATAAATCCACCTCCTAAAACATATAACTCCAATTC
TAACTTCAAAGAAAGTTCTTTCACCTTGCCCATAAAGACAAAAACGCTGG
GAGGAAAAACATTGACCATTCAGCTTATCTTCCTTCCAAACATTCTCATC
CATGACTCAAAACAGCAAAAGATACTAAAATTCAACAGCAAATCCACAAA
GATTAACAAGATATTGTCTCAAAAATCAAAATTTAAAAACCAACAATCAG
ATTACTGAGAAACACCAAGCCACTTCGAGAAGTTCTCGAACTCGGTATAA
TCACTGTCTGAGATCATAGTCTGGTACCATGCCTTGCCGGCAGACTTGAT
TGCAGCTGCCTCCTCCTTAGTGATGGGCTTCCTCTTCTTGTCGAGCTTCT
CCTTCTTAGCTTTAACCCGTTGTGCCTCAGCCAAAAGTGACATCCGTCGA
GCAGTCTTAGCATATGGGTTCAACCTCAACAGAGTATTCAAGTTCTTGAG
AGGATTCTTCTTCATCGGAGCCCTCTTAACCTCCGTCTTAATCGGCCTGA
CAACAGACTGCACCTCATCCGAGTTAATAATCCTAGCCAAGTCAGCGTTG
ACCATCTTGGAACGAGGCAGCACATAACCCTTCTTCTTCTCGGAACCCTT
ATCAAACTTACCATAAATCTCATCAAGCTTCTCAAAAGCCGATTTAGTCC
AAACAATAAACCGCCCAAGATGGCCACCCGGCGCCAGCTTCAACAAGTTC
AATCTCTCAACATTCACAACCTCAACACCGGGAATGTTCCTAAAAGCCTT
G
back to top