CF833464

Overview
NameCF833464
Unique NameCF833464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1)

HSP 1 Score: 378.637 bits (971), Expect = 1.862e-104
Identity = 188/214 (87.85%), Postives = 195/214 (91.12%), Query Frame = 2
Query:   95 AAAARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVY 736
            AAAARPLVTVQSLEGDMATD + TV LPDVMKASIRPDIV FVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRY           PSLV+ARGHKIETVPE+PLVVSDS E VE+TSAALKVLKQIGAY+DAEKAKDS  IRPGKGKMRNRRYI+RKGPL+VY
Sbjct:    5 AAAARPLVTVQSLEGDMATDQTQTVALPDVMKASIRPDIVTFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAVPSLVLARGHKIETVPELPLVVSDSIEGVEETSAALKVLKQIGAYSDAEKAKDSHSIRPGKGKMRNRRYINRKGPLIVY 218          
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1)

HSP 1 Score: 362.073 bits (928), Expect = 1.804e-99
Identity = 178/214 (83.18%), Postives = 191/214 (89.25%), Query Frame = 2
Query:   95 AAAARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVY 736
            AAAARPLVT+Q+L+GDM+TD SSTV LPDVM A +RPDIV FVH+ IS NSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQ AFGNMCRGGRMFAPTKIWRRWHR++NVN KR+           P+LVMARGHKIE VPEMPLVVSDSAE+VEKTSAA+KVLKQIGAY DAEKAK+S GIRPGKGKMRNRRYISRKGPLVVY
Sbjct:    3 AAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVY 216          
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2)

HSP 1 Score: 358.607 bits (919), Expect = 1.994e-98
Identity = 176/214 (82.24%), Postives = 190/214 (88.79%), Query Frame = 2
Query:   95 AAAARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVY 736
            +AAARPLVTVQ L+GDM+TD S+TV LPDVM A +RPDIV FVH+ IS NSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQ AFGNMCRGGRMFAPTKIWRRWHR++NVN KR+           P+LVMARGHKIE VPEMPLVVSDSAE+VEKTSAA+KVLKQIGAY DAEKAK+S GIRPGKGKMRNRRYISRKGPLVV+
Sbjct:    4 SAAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVF 217          
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_URECA (60S ribosomal protein L4 OS=Urechis caupo GN=RPL4 PE=2 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.220e-73
Identity = 132/212 (62.26%), Postives = 162/212 (76.42%), Query Frame = 2
Query:  101 AARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVY 736
            AARPL+TV S   D    + S V LP V +A IRPDIV FVH  + KN RQPYAVS+KAGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRG RMFAPTK WRRWHR++N  Q+R+           P++VM++GH IE +PE+PLVVSDS ES++KT  A+ VL+++ A+ D EK K+S+  R GKGK+RNRR I R+GPL++Y
Sbjct:    2 AARPLITVHS---DKGAASESNVTLPAVFRAPIRPDIVNFVHFELKKNGRQPYAVSQKAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGRRMFAPTKTWRRWHRRVNTTQRRHALVSAIAATGIPAVVMSKGHCIEQIPEVPLVVSDSVESIKKTKEAVVVLRRLKAWPDVEKVKNSRRFRAGKGKLRNRRAIQRRGPLIIY 210          
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_MOUSE (60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 275.018 bits (702), Expect = 2.899e-73
Identity = 132/213 (61.97%), Postives = 162/213 (76.06%), Query Frame = 2
Query:   98 AAARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVY 736
            A ARPL++V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT  A+++LK++ A+ D +K   SQ +R GKGKMRNRR I R+GP ++Y
Sbjct:    2 ACARPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVQLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIY 211          
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4B_XENLA (60S ribosomal protein L4-B (Fragment) OS=Xenopus laevis GN=rpl4-B PE=2 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.899e-73
Identity = 132/213 (61.97%), Postives = 162/213 (76.06%), Query Frame = 2
Query:   98 AAARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVY 736
            A ARPL++V S +G+ +      V +P V KA IRPDIV FVH+N+ KN+RQPYAVSK AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+L+M++GH+IE +PE+PLVV D  ES +KT  A+ +LK++ A+ D +K   SQ +R GKGKMRNRR I R+GP V+Y
Sbjct:    1 ACARPLISVYSEKGETS---GKNVTMPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSALAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCVIY 210          
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_RAT (60S ribosomal protein L4 OS=Rattus norvegicus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 274.248 bits (700), Expect = 4.946e-73
Identity = 132/213 (61.97%), Postives = 162/213 (76.06%), Query Frame = 2
Query:   98 AAARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVY 736
            A ARPL++V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH +E VPE+PLVV D  ES +KT  A+++LK++ A+ D +K   SQ +R GKGKMRNRR I R+GP ++Y
Sbjct:    2 ACARPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHCVEEVPELPLVVEDKVESYKKTKEAVQLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIY 211          
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4A_XENLA (60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-A PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 4.946e-73
Identity = 131/213 (61.50%), Postives = 162/213 (76.06%), Query Frame = 2
Query:   98 AAARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVY 736
            A ARPL++V S +G+    +   V +P V +A IRPDIV FVH+N+ KN+RQPYAVSK AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+L+M++GH+IE +PE+PLVV D  ES +KT  A+ +LK++ A+ D +K   SQ +R GKGKMRNRR I R+GP V+Y
Sbjct:    6 ACARPLISVYSEKGE---SSGKNVTMPAVFRAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSALAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCVIY 215          
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_HUMAN (60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5)

HSP 1 Score: 273.863 bits (699), Expect = 6.459e-73
Identity = 132/213 (61.97%), Postives = 161/213 (75.59%), Query Frame = 2
Query:   98 AAARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVY 736
            A ARPL++V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT  A+ +LK++ A+ D +K   SQ +R GKGKMRNRR I R+GP ++Y
Sbjct:    2 ACARPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIY 211          
BLAST of CF833464 vs. ExPASy Swiss-Prot
Match: RL4_CANFA (60S ribosomal protein L4 OS=Canis familiaris GN=RPL4 PE=1 SV=2)

HSP 1 Score: 273.863 bits (699), Expect = 6.459e-73
Identity = 132/213 (61.97%), Postives = 161/213 (75.59%), Query Frame = 2
Query:   98 AAARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVVY 736
            A ARPL++V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT  A+ +LK++ A+ D +K   SQ +R GKGKMRNRR I R+GP ++Y
Sbjct:    2 ACARPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALACLSLPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIY 211          
The following BLAST results are available for this feature:
BLAST of CF833464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4_PRUAR1.862e-10487.8560S ribosomal protein L4 OS=Prunus armeniaca GN=RP... [more]
RL4A_ARATH1.804e-9983.1860S ribosomal protein L4-1 OS=Arabidopsis thaliana... [more]
RL4B_ARATH1.994e-9882.2460S ribosomal protein L4-2 OS=Arabidopsis thaliana... [more]
RL4_URECA2.220e-7362.2660S ribosomal protein L4 OS=Urechis caupo GN=RPL4 ... [more]
RL4_MOUSE2.899e-7361.9760S ribosomal protein L4 OS=Mus musculus GN=Rpl4 P... [more]
RL4B_XENLA2.899e-7361.9760S ribosomal protein L4-B (Fragment) OS=Xenopus l... [more]
RL4_RAT4.946e-7361.9760S ribosomal protein L4 OS=Rattus norvegicus GN=R... [more]
RL4A_XENLA4.946e-7361.5060S ribosomal protein L4-A OS=Xenopus laevis GN=rp... [more]
RL4_HUMAN6.459e-7361.9760S ribosomal protein L4 OS=Homo sapiens GN=RPL4 P... [more]
RL4_CANFA6.459e-7361.9760S ribosomal protein L4 OS=Canis familiaris GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03K16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833464 ID=CF833464; Name=CF833464; organism=Citrus sinensis; type=EST; length=737bp
TTCAATAAAACCCCTATTAACTTAACGCTGCGGCTCTGCCCCCTTCCCCA
TATATCCCCCAACAGAAAAAAACACACACAAACCAAAACCAATGGCCGCC
GCCGCCCGTCCTCTTGTAACCGTCCAGTCTTTGGAAGGTGACATGGCCAC
CGACGCAAGCTCCACCGTCCCCTTGCCCGATGTCATGAAGGCCTCTATCC
GACCCGACATCGTGGGCTTCGTTCACTCTAACATCTCCAAGAACAGCCGC
CAGCCTTACGCCGTTTCCAAGAAGGCAGGGCACCAGACCTCCGCCGAATC
ATGGGGTACCGGTCGCGCCGTCTCCCGTATCCCCCGAGTTCCCGGAGGCG
GTACCCACCGCGCCGGCCAGGGAGCCTTCGGTAACATGTGTCGCGGTGGT
CGCATGTTCGCTCCCACAAAGATCTGGCGCCGATGGCACCGTAAGATCAA
CGTCAATCAGAAGCGATATGCCATCGTTTCCGCCATTGCCGCCTCCGCTG
TCCCCTCACTTGTGATGGCCCGTGGTCACAAGATCGAGACTGTTCCGGAA
ATGCCCCTGGTCGTCAGTGATTCCGCCGAGAGTGTTGAGAAAACATCAGC
TGCTCTTAAAGTTCTGAAGCAGATCGGTGCATATGCTGACGCCGAGAAGG
CGAAGGACAGCCAGGGGATTCGCCCTGGAAAGGGTAAAATGAGAAATAGA
CGTTACATTTCTCGCAAGGGCCCGCTTGTTGTGTACT
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