CF833477

Overview
NameCF833477
Unique NameCF833477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length410
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833477 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.029e-17
Identity = 40/56 (71.43%), Postives = 44/56 (78.57%), Query Frame = -3
Query:  241 AAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 408
            AAA TTPDRQ ACNCLK AAGSI  LN NNA  LP  CGV+IPYKIS ST+C+ V+
Sbjct:   54 AAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
BLAST of CF833477 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 7.029e-17
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = -3
Query:  241 ARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 402
            ARTTPDR+TACNCLKQ +GSI  +NPNNA  LP  CGV+IPYKIS ST+C+ V+
Sbjct:   38 ARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of CF833477 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.181e-17
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = -3
Query:  241 ARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 402
            ARTT DRQTACNCLK  AGSI  +NPNNA GLP  CGV++PYKIS ST+C+ V+
Sbjct:   62 ARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CF833477 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.181e-17
Identity = 40/56 (71.43%), Postives = 43/56 (76.79%), Query Frame = -3
Query:  241 AAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 408
            AAA TTPDRQ ACNCLK AAGSI  LN NNA  LP  CGV IPYKIS ST+C+ V+
Sbjct:   62 AAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
BLAST of CF833477 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.199e-16
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = -3
Query:  241 ARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 402
            ARTTPDRQ ACNCLKQ + S+P +NPNNA  LP  CGV IPYKIS ST+C+ V+
Sbjct:   38 ARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of CF833477 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.566e-16
Identity = 39/56 (69.64%), Postives = 44/56 (78.57%), Query Frame = -3
Query:  241 AAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 408
            AAA TTPDRQ ACNCLK AAGSI  LN NNA  LP  CGV+IPYKIS +T+C+ V+
Sbjct:   62 AAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          
BLAST of CF833477 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.671e-16
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = -3
Query:  241 ARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 402
            ARTTPDRQ ACNCLKQ + S+P +NPNNA  LP  CGV+IPY+IS ST+C+ V+
Sbjct:   64 ARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CF833477 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.489e-16
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = -3
Query:  241 ARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 402
            ARTT DR+ ACNCLKQ +GSIP +NPNNA  LP  CGV++PYKIS ST+C+ V+
Sbjct:   38 ARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
BLAST of CF833477 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.951e-16
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = -3
Query:  241 AAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 408
            AAA TTPDRQ ACNC+K AA SI  LN NNA  LP  CGV+IPYKIS ST+C+ V+
Sbjct:   61 AAANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of CF833477 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.261e-15
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = -3
Query:  241 AAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 408
            +AA TTPDRQ ACNCLK AAGSI  LN NNA  LP  C V+IPYKIS ST+C+ +R
Sbjct:   60 SAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
The following BLAST results are available for this feature:
BLAST of CF833477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
NLTP4_LENCU7.029e-1771.43Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP1_PRUAR7.029e-1770.37Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP_MALDO9.181e-1770.37Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP6_LENCU9.181e-1771.43Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP1_PRUPE1.199e-1668.52Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP2_LENCU1.566e-1669.64Non-specific lipid-transfer protein 2 OS=Lens culi... [more]
NLTP1_PRUDU2.671e-1666.67Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP1_PRUDO3.489e-1666.67Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP5_LENCU5.951e-1667.86Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP_CICAR2.261e-1567.86Non-specific lipid-transfer protein OS=Cicer ariet... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03L02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03L02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833477 ID=CF833477; Name=CF833477; organism=Citrus sinensis; type=EST; length=410bp
TTTTTTTTTATTTTTGACACAAGGCAAGATTTCATTTAATAAACAGAATA
GACACAAACTGACGATGACATGAAAAGCAAAGACAATAAGACACAACATG
AAACGAGGGCGGGAACGAGACTCGCAGTACAAAGTGTAGAGAGAGACTCA
TAATTCGGACACAAAAATGTCCTTATTATTATACATTTATTCTACTCCGT
CAACTTAAATATGAAAATCAACAGCCCAGAATCCTGTTCACCGGACCTTA
GAGCAGTCAGTGGAGATGCTGATCTTGTAAGGAATGCTGACTCCACAAGC
TCGTGGAAGACCAACAGCATTATTAGGGTTGAGGTTAGGGATTGATCCGG
CGGCTTGCTTCAAGCAGTTGCATGCAGTTTGGCGGTCAGGTGTGGTTCTG
GCGGCAGCGT
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