CF833600

Overview
NameCF833600
Unique NameCF833600
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833600 vs. ExPASy Swiss-Prot
Match: IST1_RAT (IST1 homolog OS=Rattus norvegicus GN=Ist1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.156e-20
Identity = 52/128 (40.62%), Postives = 84/128 (65.62%), Query Frame = 1
Query:  271 GFKGSKCKTLLKLAIPRIKLLRNRREIQIKQMRRDIAKLLETGQEATARIRVEHIIREENMMAAQEILELYCELIVVRLPIIETQRECPLDLKEAISSLCFAAPRC-ADLPELLQVQMLFASKYGREF 651
            GFK  + +  L+L I R+KLL  ++    ++ R++IA  L  G++  ARIRVEHIIRE+ ++ A EILELYC+L++ R  +I++ +E    L E++S+L +AAPR  +++ EL  V     +KY +E+
Sbjct:    5 GFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLCAKYSKEY 132          
BLAST of CF833600 vs. ExPASy Swiss-Prot
Match: IST1_MOUSE (IST1 homolog OS=Mus musculus GN=Ist1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.156e-20
Identity = 52/128 (40.62%), Postives = 84/128 (65.62%), Query Frame = 1
Query:  271 GFKGSKCKTLLKLAIPRIKLLRNRREIQIKQMRRDIAKLLETGQEATARIRVEHIIREENMMAAQEILELYCELIVVRLPIIETQRECPLDLKEAISSLCFAAPRC-ADLPELLQVQMLFASKYGREF 651
            GFK  + +  L+L I R+KLL  ++    ++ R++IA  L  G++  ARIRVEHIIRE+ ++ A EILELYC+L++ R  +I++ +E    L E++S+L +AAPR  +++ EL  V     +KY +E+
Sbjct:    5 GFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLCAKYSKEY 132          
BLAST of CF833600 vs. ExPASy Swiss-Prot
Match: IST1_HUMAN (IST1 homolog OS=Homo sapiens GN=KIAA0174 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.156e-20
Identity = 52/128 (40.62%), Postives = 84/128 (65.62%), Query Frame = 1
Query:  271 GFKGSKCKTLLKLAIPRIKLLRNRREIQIKQMRRDIAKLLETGQEATARIRVEHIIREENMMAAQEILELYCELIVVRLPIIETQRECPLDLKEAISSLCFAAPRC-ADLPELLQVQMLFASKYGREF 651
            GFK  + +  L+L I R+KLL  ++    ++ R++IA  L  G++  ARIRVEHIIRE+ ++ A EILELYC+L++ R  +I++ +E    L E++S+L +AAPR  +++ EL  V     +KY +E+
Sbjct:    5 GFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLCAKYSKEY 132          
BLAST of CF833600 vs. ExPASy Swiss-Prot
Match: IST1_BOVIN (IST1 homolog OS=Bos taurus GN=IST1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.738e-20
Identity = 51/128 (39.84%), Postives = 83/128 (64.84%), Query Frame = 1
Query:  271 GFKGSKCKTLLKLAIPRIKLLRNRREIQIKQMRRDIAKLLETGQEATARIRVEHIIREENMMAAQEILELYCELIVVRLPIIETQRECPLDLKEAISSLCFAAPRC-ADLPELLQVQMLFASKYGREF 651
            G K  + +  L+L I R+KLL  ++    ++ R++IA  L  G++  ARIRVEHIIRE+ ++ A EILELYC+L++ R  +I++ +E    L E++S+L +AAPR  +++ EL  V     +KY +E+
Sbjct:    5 GIKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLCAKYSKEY 132          
BLAST of CF833600 vs. ExPASy Swiss-Prot
Match: IST1_PONAB (IST1 homolog OS=Pongo abelii GN=IST1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 51/128 (39.84%), Postives = 83/128 (64.84%), Query Frame = 1
Query:  271 GFKGSKCKTLLKLAIPRIKLLRNRREIQIKQMRRDIAKLLETGQEATARIRVEHIIREENMMAAQEILELYCELIVVRLPIIETQRECPLDLKEAISSLCFAAPRC-ADLPELLQVQMLFASKYGREF 651
            GFK  + +  L+L I R+KLL  ++    ++ R++IA  L  G++  ARIRVEHIIRE+ ++ A EILELYC+L++ R  +I++ +E    L E++S+L +AAPR  +++ EL  V     +KY + +
Sbjct:    5 GFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLCAKYSKGY 132          
BLAST of CF833600 vs. ExPASy Swiss-Prot
Match: IST1L_DICDI (IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.858e-19
Identity = 48/128 (37.50%), Postives = 83/128 (64.84%), Query Frame = 1
Query:  262 FNKGFKGSKCKTLLKLAIPRIKLLRNRREIQIKQMRRDIAKLLETGQEATARIRVEHIIREENMMAAQEILELYCELIVVRLPIIETQRECPLDLKEAISSLCFAAPRCADLPELLQVQMLFASKYGR 645
            F   +   K K  LKLA+ RI++L+N++   ++  +R++A+LL    E +ARIRVE IIR+E ++   +I+E+ CEL+  R+ +I    E PL++KE+I +L +++ R   +PEL Q++    +KYG+
Sbjct:    4 FGPSYDSYKLKVQLKLAVSRIQILKNKKANIVRDEKRNVAELLRKKNEESARIRVETIIRDEYLIECFQIIEVLCELLHARINLINATTEMPLEMKESIFTLVYSSQR-IQIPELEQIKNQLKAKYGK 130          
BLAST of CF833600 vs. ExPASy Swiss-Prot
Match: IST1_YEAST (Vacuolar protein sorting-associated protein IST1 OS=Saccharomyces cerevisiae GN=IST1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 48/131 (36.64%), Postives = 75/131 (57.25%), Query Frame = 1
Query:  286 KCKTLLKLAIPRIKLLRNRREIQIKQMRRDIAKLLETGQEATARIRVEHIIREENMMAAQEILELYCELIVVRLPI---IETQRECPLD-----LKEAISSLCFAAPRCADLPELLQVQMLFASKYGREFV 654
            K KT LK+ I R++  + +++   KQ RR +A+LL T +E  A  RVE +I ++  +   EILELYCEL++ R+ +   I T+ +   +     + EAI SL +A     ++ EL Q++ L A K   EFV
Sbjct:   11 KLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIELLEILELYCELLLARVQVINDISTEEQLVKEHMDDGINEAIRSLIYAILFVDEVKELSQLKDLMAWKINVEFV 141          
The following BLAST results are available for this feature:
BLAST of CF833600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
IST1_RAT1.156e-2040.63IST1 homolog OS=Rattus norvegicus GN=Ist1 PE=2 SV=... [more]
IST1_MOUSE1.156e-2040.63IST1 homolog OS=Mus musculus GN=Ist1 PE=2 SV=1[more]
IST1_HUMAN1.156e-2040.63IST1 homolog OS=Homo sapiens GN=KIAA0174 PE=1 SV=1[more]
IST1_BOVIN5.738e-2039.84IST1 homolog OS=Bos taurus GN=IST1 PE=2 SV=1[more]
IST1_PONAB7.495e-2039.84IST1 homolog OS=Pongo abelii GN=IST1 PE=2 SV=1[more]
IST1L_DICDI4.858e-1937.50IST1-like protein OS=Dictyostelium discoideum GN=D... [more]
IST1_YEAST3.983e-1336.64Vacuolar protein sorting-associated protein IST1 O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_03O11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833600 ID=CF833600; Name=CF833600; organism=Citrus sinensis; type=EST; length=694bp
CAAACACTAAACCCGCTTTAAAAAGAAAATGTTGGCTTCTTCTTGTCAAA
TTGTCGAAAGCAATTTTCCTTAAACCATAAGCAAAAGAGAGACTCGCTGC
TACGCGTCGTCGTATCGAGAATATAAAAGTGTAGCAGTTGAATCCAATCC
ATTACTTATATAAACCTTCTTATCTCTTTGATACCTCTCCAGTGATATCA
AAGGATACAAAAGACTACAGTTGTGATCTGATCTTTGATCATGTCGATGC
TCGATTCTTTCTTCAACAAGGGCTTCAAAGGATCTAAATGCAAAACCCTT
CTGAAATTGGCGATTCCGCGCATAAAGTTGCTTAGGAACAGAAGAGAGAT
TCAGATTAAGCAAATGCGCCGTGACATTGCCAAGCTCCTTGAGACTGGCC
AAGAAGCCACAGCTCGCATTCGGGTAGAGCATATAATAAGGGAAGAAAAT
ATGATGGCTGCTCAAGAGATCCTTGAGCTGTATTGCGAGCTTATTGTTGT
CCGCCTTCCAATTATCGAAACACAAAGGGAATGCCCTCTTGACTTGAAAG
AAGCAATATCTAGTTTGTGTTTCGCTGCGCCAAGATGTGCGGATCTTCCA
GAGCTTCTGCAGGTACAGATGCTTTTTGCTTCCAAATACGGCAGGGAATT
TGTAGCAGCTGCAACTGAGCTCATGCCGGATTGTGGTGTTAATC
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