CF833602

Overview
NameCF833602
Unique NameCF833602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length409
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF833602 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.914e-14
Identity = 39/61 (63.93%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   17 FLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 199
            FLGT          P F+GVSVESKS   M+SDAE WNGR AM+GLVALA TEFVKG++LV
Sbjct:  136 FLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196
[Close]
BLAST of CF833602 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.340e-12
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 2 
Query:   17 FLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 199
            FL T          PL +G SVESKS G  ++DAELWNGRFAM+GLVALA TEF+ G+  V
Sbjct:  169 FLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229
[Close]
BLAST of CF833602 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.340e-12
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   17 FLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 199
            FL T          P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALA TE+VKG  L+
Sbjct:  137 FLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197
The following BLAST results are available for this feature:
BLAST of CF833602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ELI_PEA1.914e-1463.93Early light-induced protein, chloroplastic OS=Pisu... [more]
ELI5_HORVU2.340e-1257.38High molecular mass early light-inducible protein ... [more]
DS22_CRAPL2.340e-1254.10Desiccation stress protein DSP-22, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_03O12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03O12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833602 ID=CF833602; Name=CF833602; organism=Citrus sinensis; type=EST; length=409bp
GGTGGAGTTGCCCGTTTTCTTGGGGACCAGTGTTCTGCTTTCGGTTGCGT
CCCTCGTTCCTTTGTTTAAAGGTGTCAGCGTGGAGTCTAAATCGGATGGG
TTCATGACTTCGGATGCTGAGTTGTGGAATGGGAGGTTCGCTATGATGGG
TCTTGTTGCTTTGGCTGTCACTGAGTTTGTTAAAGGCAGTACCCTTGTTT
AGTTAAGTCCAATTTTCCAGTGATATGCGGACTGCAGAGTCTTGAAATGA
TAACAAGACCCTATTCTTAATACTTGAAGCGCACGTCATGTTTCTTCCGT
GGCTAATTATTGTGTATGAATTATGGTGGTGTTGTATGTAAATCTCTGTT
TTCCCATGCCAATTCTCTAAATAAATCACCCTTTTCCGTTTTGAAAAAAA
AAAAAAAAA
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