CF833629

Overview
NameCF833629
Unique NameCF833629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833629 vs. ExPASy Swiss-Prot
Match: HIBCH_HUMAN (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Homo sapiens GN=HIBCH PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 1.007e-28
Identity = 74/180 (41.11%), Postives = 112/180 (62.22%), Query Frame = -1
Query:  352 GHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLD-GQSVLNKQSI--IDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQALAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDP 882
            G LG FLALTG RL G+++  AG+ATHFV SEKL  LE+ L+ L +  +  + S +E +  + ++D  +S + ++ +  I+ CFS  TV EII++ +    ++G+ +    LK + K SPT LKITLR + EG  + L E L  E+RL+   +R     D +EG+RA+ I+KD +PKW P
Sbjct:  189 GKLGYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCFSANTVEEIIENLQ----QDGSSFALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLSQACMR---GHDFHEGVRAVLIDKDQSPKWKP 361          
BLAST of CF833629 vs. ExPASy Swiss-Prot
Match: HIBCH_CHICK (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Gallus gallus GN=HIBCH PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.900e-27
Identity = 73/209 (34.93%), Postives = 115/209 (55.02%), Query Frame = -1
Query:  280 GHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDE-------CFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQALAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTXXXXXXXXXXXVFQPFG-EDLEL 882
            G +G  LALTG RL G++++ AG+ATHFV S KLPELEK LI L +  +  +   +  +    ++D +    K+ ++DE        FS  ++ EI++  +    ++G+ +    L+ + K SPT LK+TLR +REG   +L +    E+RL+   +R     D YEG+RA+ I+KD +P+W P              F+P G  DL+L
Sbjct:  188 GKIGHLLALTGFRLKGRDVLKAGIATHFVESGKLPELEKDLIALKSPSKENIADLLNSYHMQTKIDQE----KEFVLDEHMERINSIFSANSMEEIVQKLK----QDGSPFATKQLEAINKMSPTSLKLTLRQLREGATMSLQDVFTMEYRLSQACMR---GHDFYEGVRAVLIDKDQSPRWKPAALEEVSDEFVDNCFKPLGNNDLKL 385          
BLAST of CF833629 vs. ExPASy Swiss-Prot
Match: HIBCH_DANRE (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Danio rerio GN=hibch PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.528e-27
Identity = 72/182 (39.56%), Postives = 104/182 (57.14%), Query Frame = -1
Query:  346 GHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQS--VLNKQS-IIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQALAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPT 882
            G LG FLALTG RL G+++   G+ATHFV SEK+  LEK L+ L +     V   ++ + E   LD +   VL +Q+  ID  FS  +V EI+++ +    K+G+ +     + L K SPT LK+T R + EG   +L E    E+RL+   +      D YEG+RA+ I+KD +PKW P T
Sbjct:  185 GKLGLFLALTGFRLKGRDVQRVGVATHFVQSEKIESLEKDLVDLKSPSISDVAQLLDSYQEQSHLDAEKPFVLQEQTEAIDRLFSAGSVEEIVENLK----KDGSAFALKQAETLAKMSPTSLKLTFRQIEEGARMSLQEVFMMEYRLSQACMN---GHDFYEGVRAVLIDKDQSPKWKPST 359          
BLAST of CF833629 vs. ExPASy Swiss-Prot
Match: HIBCH_MOUSE (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Mus musculus GN=Hibch PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.100e-26
Identity = 71/180 (39.44%), Postives = 107/180 (59.44%), Query Frame = -1
Query:  352 GHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLD-GQSVLNKQSI--IDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQALAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDP 882
            G LG FLALTG RL G+++  AG+ATHFV SEKL  LE+ L+ L +     V   +E +    ++D  +S++ ++ +  I+ CFS  TV +II++      ++G+ +    +K + K SPT LKITLR + EG  + L E L  E+R+T   +      D +EG+RA+ I+KD  PKW P
Sbjct:  188 GKLGYFLALTGYRLKGRDVHRAGIATHFVDSEKLRVLEEELLALKSPSAEDVAGVLESYHAKSKMDQDKSIIFEEHMDKINSCFSANTVEQIIENLR----QDGSPFAIEQMKVINKMSPTSLKITLRQLMEGSSKTLQEVLIMEYRITQACME---GHDFHEGVRAVLIDKDQTPKWKP 360          
BLAST of CF833629 vs. ExPASy Swiss-Prot
Match: HIBCH_RAT (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Rattus norvegicus GN=Hibch PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 6.111e-26
Identity = 70/180 (38.89%), Postives = 106/180 (58.89%), Query Frame = -1
Query:  352 GHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQL-DGQSVLNKQSI--IDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQALAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDP 882
            G LG FLALTG RL G+++  AG+ATHFV SEKL  LE+ L+ L +     V   +E +    ++   +S++ ++ +  I+ CFS  TV +I+++      ++G+ +    +K + K SPT LKITLR + EG  + L E L  E+RLT   +      D +EG+RA+ I+KD  PKW P
Sbjct:  188 GKLGYFLALTGFRLKGRDVHRAGIATHFVDSEKLHVLEEELLALKSPSAEDVAGVLESYHAKSKMGQDKSIIFEEHMDKINSCFSANTVEQILENLR----QDGSPFAMEQIKVINKMSPTSLKITLRQLMEGSTKTLQEVLTMEYRLTQACME---GHDFHEGVRAVLIDKDQTPKWKP 360          
BLAST of CF833629 vs. ExPASy Swiss-Prot
Match: HIBCH_BOVIN (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Bos taurus GN=HIBCH PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.825e-25
Identity = 68/180 (37.78%), Postives = 103/180 (57.22%), Query Frame = -1
Query:  352 GHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDEC---FSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQALAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDP 882
            G LG FLALTG RL G+++  AG+ATHFV  EKL  LE+ L+ L +  +  +   +E +    + D       +  +D+    FS  TV +I+ + +    ++G+ +    LK +KK SPT LKITLR + EG  + L E L  E+RL+   ++     D +EG+RA+ I+KD +PKW P
Sbjct:  189 GKLGYFLALTGFRLKGRDVYTAGIATHFVDFEKLGMLEEDLLALKSPSKENIADVLETYHAKSKTDQDKPFILEEHMDKINSWFSANTVEQIVDNLQ----QDGSSFALEQLKVIKKMSPTSLKITLRQLMEGSSKTLPEVLIMEYRLSQACMK---GHDFHEGVRAVLIDKDQSPKWKP 361          
BLAST of CF833629 vs. ExPASy Swiss-Prot
Match: HIBCH_DICDI (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Dictyostelium discoideum GN=hibch PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.324e-23
Identity = 62/200 (31.00%), Postives = 101/200 (50.50%), Query Frame = -1
Query:  277 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGRE-QALAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTXXXXXXXXXXXVFQPFGEDLELQ 873
            G +LALTG++L G  +  AG+ATHFV +E +  LEK +          + S + ++ +  +       +    I+  F K +V EI +  E     E + W    LK LK  SP+ L +    +++G +  +LA+CL+ EFR++ + L      D +EG+RAL ++KD  PKW PP+            F+P   + EL+
Sbjct:  187 GMYLALTGSKLKGNNVYLAGVATHFVSNEHIQALEKEIEECENPTSQTINSILTKYHDKSKSTSNEYNDNLGDIERIFGKNSVKEIFEQLEL---LENSEWAKQTLKTLKSVSPSSLMVVFEQMKQGAKLPSLAKCLEMEFRISQHFLE---KPDFFEGVRALLVDKDKNPKWLPPSIDQIDQTLVNSYFKPLSNNKELK 380          
BLAST of CF833629 vs. ExPASy Swiss-Prot
Match: HIBCH_XENLA (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus laevis GN=hibch PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.409e-22
Identity = 72/205 (35.12%), Postives = 105/205 (51.22%), Query Frame = -1
Query:  280 GHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSED--VQLDGQSVL-NKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQALAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTXXXXXXXXXXXVFQPFG-EDLEL 882
            G LG +LALTG RL G ++  AG+ATHFV SEKL  LE+ L+ + +  +  V   ++ + +      D   VL      I+  FS  TV EI+++ +     +G+ +    L+ L   SPT LKIT R ++EG   +L E L  E+RL+   +      D YEG+RA+ I+KD   KW P +            F   G  DL+L
Sbjct:  188 GKLGLYLALTGFRLKGSDVQKAGIATHFVESEKLSSLEQDLVAMKSPSKENVADVLDSYQKKSYAAQDKPFVLAENMDKINSLFSGNTVEEIMENLKC----DGSSFAMKQLQTLSTMSPTSLKITFRQLKEGASMSLQEVLTMEYRLSQACMN---GHDFYEGVRAVLIDKDQKAKWKPESLEEVTEDYIDSCFTSLGSRDLKL 385          
BLAST of CF833629 vs. ExPASy Swiss-Prot
Match: HIBCH_XENTR (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus tropicalis GN=hibch PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.558e-21
Identity = 65/180 (36.11%), Postives = 98/180 (54.44%), Query Frame = -1
Query:  352 GHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSED--VQLDGQSVLNKQ-SIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQALAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDP 882
            G LG +LALTG RL G ++  AG+ATHFV SEK+P LE+ L+ +    +  V   ++ +        D   VL +    I+  FS  +V  II++       +G+ +    L+ L   SPT LKIT R ++EG   +L E L  E+RL+   ++     D YEG+RA+ I+K+   KW+P
Sbjct:  188 GKLGLYLALTGFRLKGSDVQKAGIATHFVESEKIPSLEQDLVAMKCPSKENVADVLDSYHNKSYAAQDKPFVLAEHLDKINSLFSASSVEAIIENLRC----DGSSFALKQLQTLSTMSPTSLKITFRQLKEGSSMSLQEVLTMEYRLSQACMKGY---DFYEGVRAVLIDKNQNAKWNP 360          
BLAST of CF833629 vs. ExPASy Swiss-Prot
Match: HIBCH_SCHPO (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Schizosaccharomyces pombe GN=ehd3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.668e-15
Identity = 51/178 (28.65%), Postives = 85/178 (47.75%), Query Frame = -1
Query:  358 GHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVL-NKQSIIDECFSKETVAEIIKSFEAEAGKEG--NGWIGPVLKGLKKSSPTGLKITLRSVREGREQALAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKW 882
            G+ G +L LT   + G + +  G+ATHFVP    P LE RL  LNT D   + + I EF+E       +   +   +I++CF K    +II++ +  A        +    +K L   SPT + +T R ++   + +++E    +  ++  +L+     D  EG+ A  I K   PKW
Sbjct:  209 GYFGTYLGLTSQIVKGYDCLRTGIATHFVPKHMFPHLEDRLAELNTSDISKINNTILEFAEFASSSPPTFTPDVMDVINKCFCKNDTVDIIRALKEYASNTSALAEFAKSTVKTLYSKSPTSIAVTNRLIKSAAKWSISEAFYYDHIVSYYMLK---QPDFVEGVNAQLITKTKNPKW 383          
The following BLAST results are available for this feature:
BLAST of CF833629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
HIBCH_HUMAN1.007e-2841.113-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_CHICK1.900e-2734.933-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_DANRE5.528e-2739.563-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_MOUSE2.100e-2639.443-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_RAT6.111e-2638.893-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_BOVIN8.825e-2537.783-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_DICDI6.324e-2331.003-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_XENLA1.409e-2235.123-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_XENTR1.558e-2136.113-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_SCHPO1.668e-1528.653-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_03P04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03P04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833629 ID=CF833629; Name=CF833629; organism=Citrus sinensis; type=EST; length=882bp
TTTTTTTTTTTTTTTGACGGAAACAACGGGGCAGTTAATTTTTCTATCCC
AAGAAACTTCAGTTCTGATTATTGTTGAGTGTAACTACTAGTGACTTTTA
TTTCAAATGAAAGCATCTAGTACCATGATGATACTACATACTTGGTGTTC
ATAACATAGAACGCCAGTAGAAACATGCAGACCAAAAATCTATTTAGCTT
CGGCTGTCACCTGTGAAGTTGCATATGCTGAATTCTCATATTTTCCATCC
CACCTGCAGTTTTCATTCTCTGGAATCTGGAGCTCTAAATCCTCTCCAAA
TGGCTGGAAAACCAGATCCACTTTGTCATCGTCAACTTTATCAAGCGTCG
GTGGATCCCACTTTGGAGCATTATCCTTCTCAATGGTGAGAGCTCTAATA
CCCTCATAGATATCTGCAGATATTATTGCTCGTAGTATGTTTATTGTCAG
CCTAAATTCCTTCTTCAGACATTCAGCCAGTGCTTGCTCTCTGCCTTCAC
GCACCGATCTTAGTGTTATTTTCAATCCTGTTGGCGATGATTTCTTTAAT
CCCTTCAGCACTGGACCTATCCATCCATTTCCTTCTTTGCCTGCCTCTGC
TTCAAATGATTTTATAATCTCGGCTACAGTCTCCTTTGAGAAACACTCAT
CAATTATAGACTGCTTATTTAAGACACTTTGTCCATCAAGCTGAACATCC
TCAGAGAACTCTTCAATTGCAGATTTGACTGCAATTTCATCACCAGTGTT
TAAGCCTATCAGACGCTTTTCTAGCTCGGGCAATTTCTCAGAAGGGACAA
AATGGGTAGCTAGCCCAGCTGCAACCAGTTCCTTGCCATTTAGCCTTGCC
CCAGTTAAAGCCAGGAATTCCCCTAAATGTCC
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