CF833630

Overview
NameCF833630
Unique NameCF833630
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833630 vs. ExPASy Swiss-Prot
Match: HIBCH_HUMAN (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Homo sapiens GN=HIBCH PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 3.834e-36
Identity = 89/217 (41.01%), Postives = 132/217 (60.83%), Query Frame = 3
Query:    6 LMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLD-GQSVLNKQSI--IDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQALAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKW 647
            L V  +F V TEK +F+ PE +IG   D G  +   RL G LG FLALTG RL G+++  AG+ATHFV SEKL  LE+ L+ L +  +  + S +E +  + ++D  +S + ++ +  I+ CFS  TV EII++ +    ++G+ +    LK + K SPT LKITLR + EG  + L E L  E+RL+   +R     D +EG+RA+ I+KD +PKW
Sbjct:  150 LSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCFSANTVEEIIENLQ----QDGSSFALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLSQACMR---GHDFHEGVRAVLIDKDQSPKW 359          
BLAST of CF833630 vs. ExPASy Swiss-Prot
Match: HIBCH_DANRE (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Danio rerio GN=hibch PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.611e-34
Identity = 87/217 (40.09%), Postives = 123/217 (56.68%), Query Frame = 3
Query:    6 LMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQS--VLNKQS-IIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQALAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKW 647
            L V  +F V TEKT+F+ PE  IG   D G  +   RL G LG FLALTG RL G+++   G+ATHFV SEK+  LEK L+ L +     V   ++ + E   LD +   VL +Q+  ID  FS  +V EI+++ +    K+G+ +     + L K SPT LK+T R + EG   +L E    E+RL+   +      D YEG+RA+ I+KD +PKW
Sbjct:  146 LSVHGQFRVATEKTLFAMPETGIGLFPDVGGGYFLPRLQGKLGLFLALTGFRLKGRDVQRVGVATHFVQSEKIESLEKDLVDLKSPSISDVAQLLDSYQEQSHLDAEKPFVLQEQTEAIDRLFSAGSVEEIVENLK----KDGSAFALKQAETLAKMSPTSLKLTFRQIEEGARMSLQEVFMMEYRLSQACMN---GHDFYEGVRAVLIDKDQSPKW 355          
BLAST of CF833630 vs. ExPASy Swiss-Prot
Match: HIBCH_CHICK (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Gallus gallus GN=HIBCH PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.611e-34
Identity = 82/215 (38.14%), Postives = 125/215 (58.14%), Query Frame = 3
Query:   24 FSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDE-------CFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQALAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKW 647
            F V TEKTVF+ PE +IG   D G  +   RL G +G  LALTG RL G++++ AG+ATHFV S KLPELEK LI L +  +  +   +  +    ++D +    K+ ++DE        FS  ++ EI++  +    ++G+ +    L+ + K SPT LK+TLR +REG   +L +    E+RL+   +R     D YEG+RA+ I+KD +P+W
Sbjct:  155 FRVATEKTVFAMPETAIGLFPDVGGGYFLPRLSGKIGHLLALTGFRLKGRDVLKAGIATHFVESGKLPELEKDLIALKSPSKENIADLLNSYHMQTKIDQE----KEFVLDEHMERINSIFSANSMEEIVQKLK----QDGSPFATKQLEAINKMSPTSLKLTLRQLREGATMSLQDVFTMEYRLSQACMR---GHDFYEGVRAVLIDKDQSPRW 358          
BLAST of CF833630 vs. ExPASy Swiss-Prot
Match: HIBCH_MOUSE (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Mus musculus GN=Hibch PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.363e-33
Identity = 85/217 (39.17%), Postives = 127/217 (58.53%), Query Frame = 3
Query:    6 LMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLD-GQSVLNKQSI--IDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQALAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKW 647
            L V  +F V TE+++F+ PE  IG   D G  +   RL G LG FLALTG RL G+++  AG+ATHFV SEKL  LE+ L+ L +     V   +E +    ++D  +S++ ++ +  I+ CFS  TV +II++      ++G+ +    +K + K SPT LKITLR + EG  + L E L  E+R+T   +      D +EG+RA+ I+KD  PKW
Sbjct:  149 LSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQGKLGYFLALTGYRLKGRDVHRAGIATHFVDSEKLRVLEEELLALKSPSAEDVAGVLESYHAKSKMDQDKSIIFEEHMDKINSCFSANTVEQIIENLR----QDGSPFAIEQMKVINKMSPTSLKITLRQLMEGSSKTLQEVLIMEYRITQACME---GHDFHEGVRAVLIDKDQTPKW 358          
BLAST of CF833630 vs. ExPASy Swiss-Prot
Match: HIBCH_RAT (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Rattus norvegicus GN=Hibch PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 3.967e-33
Identity = 84/217 (38.71%), Postives = 126/217 (58.06%), Query Frame = 3
Query:    6 LMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQL-DGQSVLNKQSI--IDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQALAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKW 647
            L V  +F V TE+++F+ PE  IG   D G  +   RL G LG FLALTG RL G+++  AG+ATHFV SEKL  LE+ L+ L +     V   +E +    ++   +S++ ++ +  I+ CFS  TV +I+++      ++G+ +    +K + K SPT LKITLR + EG  + L E L  E+RLT   +      D +EG+RA+ I+KD  PKW
Sbjct:  149 LSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVHRAGIATHFVDSEKLHVLEEELLALKSPSAEDVAGVLESYHAKSKMGQDKSIIFEEHMDKINSCFSANTVEQILENLR----QDGSPFAMEQIKVINKMSPTSLKITLRQLMEGSTKTLQEVLTMEYRLTQACME---GHDFHEGVRAVLIDKDQTPKW 358          
BLAST of CF833630 vs. ExPASy Swiss-Prot
Match: HIBCH_BOVIN (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Bos taurus GN=HIBCH PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.154e-32
Identity = 82/212 (38.68%), Postives = 122/212 (57.55%), Query Frame = 3
Query:   21 KFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDEC---FSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQALAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKW 647
            +F V TEK+VF+ PE +IG   D G  +   RL G LG FLALTG RL G+++  AG+ATHFV  EKL  LE+ L+ L +  +  +   +E +    + D       +  +D+    FS  TV +I+ + +    ++G+ +    LK +KK SPT LKITLR + EG  + L E L  E+RL+   ++     D +EG+RA+ I+KD +PKW
Sbjct:  155 QFRVATEKSVFAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVYTAGIATHFVDFEKLGMLEEDLLALKSPSKENIADVLETYHAKSKTDQDKPFILEEHMDKINSWFSANTVEQIVDNLQ----QDGSSFALEQLKVIKKMSPTSLKITLRQLMEGSSKTLPEVLIMEYRLSQACMK---GHDFHEGVRAVLIDKDQSPKW 359          
BLAST of CF833630 vs. ExPASy Swiss-Prot
Match: HIBCH_DICDI (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Dictyostelium discoideum GN=hibch PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.177e-31
Identity = 77/215 (35.81%), Postives = 115/215 (53.49%), Query Frame = 3
Query:    6 LMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGRE-QALAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKW 647
            L V  KF V TE TVF+ PE  IGF  D G S+   RLP + G +LALTG++L G  +  AG+ATHFV +E +  LEK +          + S + ++ +  +       +    I+  F K +V EI +  E     E + W    LK LK  SP+ L +    +++G +  +LA+CL+ EFR++ + L      D +EG+RAL ++KD  PKW
Sbjct:  145 LSVHGKFRVATENTVFAMPETGIGFFCDVGGSYFLPRLPNNYGMYLALTGSKLKGNNVYLAGVATHFVSNEHIQALEKEIEECENPTSQTINSILTKYHDKSKSTSNEYNDNLGDIERIFGKNSVKEIFEQLEL---LENSEWAKQTLKTLKSVSPSSLMVVFEQMKQGAKLPSLAKCLEMEFRISQHFLE---KPDFFEGVRALLVDKDKNPKW 353          
BLAST of CF833630 vs. ExPASy Swiss-Prot
Match: HIBCH_XENLA (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus laevis GN=hibch PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.003e-30
Identity = 80/211 (37.91%), Postives = 116/211 (54.98%), Query Frame = 3
Query:   24 FSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSED--VQLDGQSVL-NKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQALAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKW 647
            F V +EKT+F+ PE +IG   D G  +   RL G LG +LALTG RL G ++  AG+ATHFV SEKL  LE+ L+ + +  +  V   ++ + +      D   VL      I+  FS  TV EI+++ +     +G+ +    L+ L   SPT LKIT R ++EG   +L E L  E+RL+   +      D YEG+RA+ I+KD   KW
Sbjct:  155 FRVASEKTLFAMPETAIGLFPDVGGGYFLPRLTGKLGLYLALTGFRLKGSDVQKAGIATHFVESEKLSSLEQDLVAMKSPSKENVADVLDSYQKKSYAAQDKPFVLAENMDKINSLFSGNTVEEIMENLKC----DGSSFAMKQLQTLSTMSPTSLKITFRQLKEGASMSLQEVLTMEYRLSQACMN---GHDFYEGVRAVLIDKDQKAKW 358          
BLAST of CF833630 vs. ExPASy Swiss-Prot
Match: HIBCH_XENTR (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus tropicalis GN=hibch PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.539e-29
Identity = 78/211 (36.97%), Postives = 115/211 (54.50%), Query Frame = 3
Query:   24 FSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSED--VQLDGQSVLNKQ-SIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQALAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKW 647
            F V +E T+F+ PE +IG   D G  +   RLPG LG +LALTG RL G ++  AG+ATHFV SEK+P LE+ L+ +    +  V   ++ +        D   VL +    I+  FS  +V  II++       +G+ +    L+ L   SPT LKIT R ++EG   +L E L  E+RL+   ++     D YEG+RA+ I+K+   KW
Sbjct:  155 FRVASENTLFAMPETAIGLFPDVGGGYFLPRLPGKLGLYLALTGFRLKGSDVQKAGIATHFVESEKIPSLEQDLVAMKCPSKENVADVLDSYHNKSYAAQDKPFVLAEHLDKINSLFSASSVEAIIENLRC----DGSSFALKQLQTLSTMSPTSLKITFRQLKEGSSMSLQEVLTMEYRLSQACMKGY---DFYEGVRAVLIDKNQNAKW 358          
BLAST of CF833630 vs. ExPASy Swiss-Prot
Match: HIBCH_SCHPO (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Schizosaccharomyces pombe GN=ehd3 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.046e-25
Identity = 68/217 (31.34%), Postives = 108/217 (49.77%), Query Frame = 3
Query:    6 LMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVL-NKQSIIDECFSKETVAEIIKSFEAEAGKEG--NGWIGPVLKGLKKSSPTGLKITLRSVREGREQALAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKW 647
            L + + F +  E T+F+ PE  IG+ TD   SF  SRLPG+ G +L LT   + G + +  G+ATHFVP    P LE RL  LNT D   + + I EF+E       +   +   +I++CF K    +II++ +  A        +    +K L   SPT + +T R ++   + +++E    +  ++  +L+     D  EG+ A  I K   PKW
Sbjct:  170 LAMHVPFRIACEDTMFAMPETGIGYFTDVAASFFFSRLPGYFGTYLGLTSQIVKGYDCLRTGIATHFVPKHMFPHLEDRLAELNTSDISKINNTILEFAEFASSSPPTFTPDVMDVINKCFCKNDTVDIIRALKEYASNTSALAEFAKSTVKTLYSKSPTSIAVTNRLIKSAAKWSISEAFYYDHIVSYYMLK---QPDFVEGVNAQLITKTKNPKW 383          
The following BLAST results are available for this feature:
BLAST of CF833630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
HIBCH_HUMAN3.834e-3641.013-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_DANRE1.611e-3440.093-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_CHICK1.611e-3438.143-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_MOUSE1.363e-3339.173-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_RAT3.967e-3338.713-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_BOVIN1.154e-3238.683-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_DICDI2.177e-3135.813-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_XENLA7.003e-3037.913-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_XENTR4.539e-2936.973-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_SCHPO1.046e-2531.343-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_03P04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03P04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833630 ID=CF833630; Name=CF833630; organism=Citrus sinensis; type=EST; length=648bp
CGTCTTTGATGGTTCCTCTGAAATTCTCAGTTGTCACGGAAAAAACTGTT
TTTTCCACTCCAGAAGCAAGTATTGGATTTCATACTGATTGCGGTTTCTC
ATTCATCCATTCTCGTCTCCCTGGACATTTAGGGGAATTCCTGGCCTTAA
CTGGGGCAAGGCTAAATGGCAAGGAACTGGTTGCAGCTGGGCTAGCTACC
CATTTTGTCCCTTCTGAGAAATTGCCCGAGCTAGAAAAGCGTCTGATAGG
CTTAAACACTGGTGATGAAATTGCAGTCAAATCTGCAATTGAAGAGTTCT
CTGAGGATGTTCAGCTTGATGGACAAAGTGTCTTAAATAAGCAGTCTATA
ATTGATGAGTGTTTCTCAAAGGAGACTGTAGCCGAGATTATAAAATCATT
TGAAGCAGAGGCAGGCAAAGAAGGAAATGGATGGATAGGTCCAGTGCTGA
AGGGATTAAAGAAATCATCGCCAACAGGATTGAAAATAACACTAAGATCG
GTGCGTGAAGGCAGAGAGCAAGCACTGGCTGAATGTCTGAAGAAGGAATT
TAGGCTGACAATAAACATACTACGAGCAATAATATCTGCAGATATCTATG
AGGGTATTAGAGCTCTCACCATTGAGAAGGATAATGCTCCNAAGTGGG
back to top