CF833638
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF833638 vs. ExPASy Swiss-Prot
Match: RL362_ARATH (60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 1.489e-40 Identity = 85/112 (75.89%), Postives = 94/112 (83.93%), Query Frame = -3 Query: 288 MAPKQPNTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSRAPGGG--EKKK 617 M Q TGLFVGLNKGH+VT++EL PRP RKGKTSKR F+R +I+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEM + LRK R+ GGG EKKK Sbjct: 1 MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112
BLAST of CF833638 vs. ExPASy Swiss-Prot
Match: RL363_ARATH (60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=2 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 9.654e-40 Identity = 83/105 (79.05%), Postives = 92/105 (87.62%), Query Frame = -3 Query: 288 TGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSRAPGGG--EKKK 596 TGLFVGLNKGH+VTK+E PPRP +RKGKTSKR F+R +I+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEM + LRK R+ G G EKKK Sbjct: 4 TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKKK 108
BLAST of CF833638 vs. ExPASy Swiss-Prot
Match: RL361_ARATH (60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 8.173e-39 Identity = 82/105 (78.10%), Postives = 90/105 (85.71%), Query Frame = -3 Query: 291 TGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSRAPGG---GEKK 596 TGLFVGLNKGH+VT++EL PRP RKGKTSKR F+R +IREVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEM + LRK R+ GG EKK Sbjct: 8 TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEKK 112
BLAST of CF833638 vs. ExPASy Swiss-Prot
Match: RL36_DAUCA (60S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2) HSP 1 Score: 149.443 bits (376), Expect = 1.443e-35 Identity = 74/91 (81.32%), Postives = 80/91 (87.91%), Query Frame = -3 Query: 345 MAPKQPNTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKRE 617 MAPKQPNTGLFVGLNKGHIVTKKEL PRP+DRKGKTSKR HFVR +IREVAGF PYEKRITELLKVGKDKRALKV + K+G H + K+ E Sbjct: 1 MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRITELLKVGKDKRALKVRQEKVG-HSQESKEEE 90
BLAST of CF833638 vs. ExPASy Swiss-Prot
Match: RL36_ENTCP (60S ribosomal protein L36 OS=Enteromorpha compressa GN=RL36 PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 9.057e-30 Identity = 67/96 (69.79%), Postives = 75/96 (78.12%), Query Frame = -3 Query: 297 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSRAPGGGE 584 VGLNKGH VTKK PRP+ RKG S+RV VR V+REVAG+APYE+R+ ELLKVGKDKRALK+ KRKLGTH R KKKREEM LRK +A GE Sbjct: 6 VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKRALKMCKRKLGTHMRGKKKREEMAGVLRKMQAASKGE 101
BLAST of CF833638 vs. ExPASy Swiss-Prot
Match: RL36A_SCHPO (60S ribosomal protein L36-A OS=Schizosaccharomyces pombe GN=rpl36a PE=2 SV=2) HSP 1 Score: 117.472 bits (293), Expect = 6.075e-26 Identity = 55/93 (59.14%), Postives = 76/93 (81.72%), Query Frame = -3 Query: 315 GLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSR 593 GL VGLNKG ++TK++LP RP+ RKG+ SKR FVR+++REVAGFAPYE+R+ EL++ +DKRA K+AK++LGT KRAK K EE+ + ++ SR Sbjct: 4 GLVVGLNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96
BLAST of CF833638 vs. ExPASy Swiss-Prot
Match: RL36_IXOSC (60S ribosomal protein L36 OS=Ixodes scapularis GN=RpL36 PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 3.938e-25 Identity = 58/100 (58.00%), Postives = 69/100 (69.00%), Query Frame = -3 Query: 291 LFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSRAPGGGEKK 590 L VGL KGH VTK E PRP+ RKG SK FVR +IREV GFAP+E+R ELLKV KDKRALK K++LGTH R K+KR+E+ N L R ++K Sbjct: 7 LAVGLGKGHKVTKNEYKPRPSRRKGALSKHTRFVRDLIREVCGFAPFERRAMELLKVSKDKRALKFIKKRLGTHLRGKRKRDELSNVLVAQRKAAAHKEK 106
BLAST of CF833638 vs. ExPASy Swiss-Prot
Match: RL36B_SCHPO (60S ribosomal protein L36-B OS=Schizosaccharomyces pombe GN=rpl36b PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 3.938e-25 Identity = 55/93 (59.14%), Postives = 74/93 (79.57%), Query Frame = -3 Query: 315 GLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSR 593 GL VGLNKG +TK++LP RP+ RKG SKR FVR+++REVAGFAPYE+R+ EL++ +DKRA K+AK++LGT KRAK K EE+ + ++ SR Sbjct: 4 GLVVGLNKGKTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96
BLAST of CF833638 vs. ExPASy Swiss-Prot
Match: RL36_XENTR (60S ribosomal protein L36 OS=Xenopus tropicalis GN=rpl36 PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 7.426e-24 Identity = 55/90 (61.11%), Postives = 65/90 (72.22%), Query Frame = -3 Query: 315 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSR 584 VGLNKGH VTK PR R+G+ +K FVR +IREV GFAPYE+R ELLKV KDKRALK K+++GTH RAK+KREE+ N L R Sbjct: 9 VGLNKGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRIGTHIRAKRKREELSNVLAAMR 98
BLAST of CF833638 vs. ExPASy Swiss-Prot
Match: RL36_XENLA (60S ribosomal protein L36 OS=Xenopus laevis GN=rpl36 PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 7.426e-24 Identity = 55/90 (61.11%), Postives = 65/90 (72.22%), Query Frame = -3 Query: 315 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSR 584 VGLNKGH VTK PR R+G+ +K FVR +IREV GFAPYE+R ELLKV KDKRALK K+++GTH RAK+KREE+ N L R Sbjct: 9 VGLNKGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRIGTHIRAKRKREELSNVLAAMR 98 The following BLAST results are available for this feature:
BLAST of CF833638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
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Sequences
The
following sequences are available for this feature:
EST sequence >CF833638 ID=CF833638; Name=CF833638; organism=Citrus sinensis; type=EST; length=646bpback to top |