CF833672 | Citrus Genome Database

Overview


Name	CF833672
Unique Name	CF833672
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	694

Libraries


Library Name	Type
Ruby Orange Ovary at Anthesis cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig2350	contig	Csv1_Contig2350:346..1039.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB3_SOYBN (Tubulin beta chain (Fragment) OS=Glycine max GN=TUBB PE=2 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 3.022e-45
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 1

Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP+GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  311 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399

[Close]

BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB8_MAIZE (Tubulin beta-8 chain OS=Zea mays GN=TUBB8 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.154e-45
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 1

Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  311 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399

[Close]

BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB6_MAIZE (Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.154e-45
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 1

Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  311 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399

[Close]

BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB5_MAIZE (Tubulin beta-5 chain OS=Zea mays GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.154e-45
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 1

Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  311 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399

[Close]

BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB4_ORYSJ (Tubulin beta-4 chain OS=Oryza sativa subsp. japonica GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.154e-45
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 1

Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  311 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399

[Close]

BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB4_ELEIN (Tubulin beta-4 chain OS=Eleusine indica GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.154e-45
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 1

Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  311 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399

[Close]

BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB2_ELEIN (Tubulin beta-2 chain OS=Eleusine indica GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.154e-45
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 1

Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  311 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399

[Close]

BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB1_WHEAT (Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.154e-45
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 1

Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  311 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399

[Close]

BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB1_ORYSJ (Tubulin beta-1 chain OS=Oryza sativa subsp. japonica GN=TUBB1 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 5.154e-45
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 1

Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  311 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399

[Close]

BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB7_ORYSJ (Tubulin beta-7 chain OS=Oryza sativa subsp. japonica GN=TUBB7 PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 6.732e-45
Identity = 86/89 (96.63%), Postives = 89/89 (100.00%), Query Frame = 1

Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMA+TF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  311 LTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMAATFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399

The following BLAST results are available for this feature:

BLAST of CF833672 vs. ExPASy Swiss-Prot

BLAST of CF833672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231


Match Name	E-value	Identity	Description
TBB3_SOYBN	3.022e-45	98.88	Tubulin beta chain (Fragment) OS=Glycine max GN=TU...	[more]
TBB8_MAIZE	5.154e-45	98.88	Tubulin beta-8 chain OS=Zea mays GN=TUBB8 PE=2 SV=...	[more]
TBB6_MAIZE	5.154e-45	98.88	Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=...	[more]
TBB5_MAIZE	5.154e-45	98.88	Tubulin beta-5 chain OS=Zea mays GN=TUBB5 PE=2 SV=...	[more]
TBB4_ORYSJ	5.154e-45	98.88	Tubulin beta-4 chain OS=Oryza sativa subsp. japoni...	[more]
TBB4_ELEIN	5.154e-45	98.88	Tubulin beta-4 chain OS=Eleusine indica GN=TUBB4 P...	[more]
TBB2_ELEIN	5.154e-45	98.88	Tubulin beta-2 chain OS=Eleusine indica GN=TUBB2 P...	[more]
TBB1_WHEAT	5.154e-45	98.88	Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1...	[more]
TBB1_ORYSJ	5.154e-45	98.88	Tubulin beta-1 chain OS=Oryza sativa subsp. japoni...	[more]
TBB7_ORYSJ	6.732e-45	96.63	Tubulin beta-7 chain OS=Oryza sativa subsp. japoni...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS02_04A08_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04A08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF833672 ID=CF833672; Name=CF833672; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTGACCACACTATAACTTTTATTGATTTATTTCCTTTTTCAGGAAA
ATCCTTAGCTCAAAAGTAAACAAAAAGATTGCTTGTACGTCTCAAGAAAT
CTTATAAGTTGAACTAAACCATACTAAAACATTGTCATGATTGATAGGTA
ATAGTATACCTATCATTTATTTAATTAAACAAAACAGAAAAAAAAAAAAG
CAGTGCTGCACTTAACCCATGTAGTCGGGGTTTCTTCCATATTGGGGGAC
ATTAAGAAAATCAAGATTGTCGTTCATGACATCATCATCAGCAATACTGC
CAAACGGAGGAAGCAGAAGACCCTCTGACCAGTTATTACCTGCGCAGGTG
GTTTCCATGTTCTTCAAATCAGAAAGATCTCTGCTTACGGGAATCAAAGT
TCGAAAGTAGTTAAGTTGCTTTTTCCCTCACAGCCTCAGCCATGTTCAGA
GGAAAGATGAGCACCAAAGAGGTGGATGAGCAGATGATTAATGTACAGAA
CAAGAATTCATCCTACTTTGTGGAGTGGATCCCCAACAATGTGAAGTCCA
GCGTGTGCGATATTCCACCACGTGGTCTGAAGATGGCATCTACTTTTATT
GGTAACTCAACATCCATCCAAGAGATGTTCAGGAGGGTGAGTGAACAGTT
TACTGCCATGTTCCGGCGTAAGGCCTTTTTGCATTGGTATACTG