CF833750

Overview
NameCF833750
Unique NameCF833750
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length561
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7627 contig Csv1_Contig7627:246..806. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF833750 vs. ExPASy Swiss-Prot
Match: QORH_ARATH (Putative quinone-oxidoreductase homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g13010 PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 2.819e-76
Identity = 141/185 (76.22%), Postives = 159/185 (85.95%), Query Frame = 3 
Query:    6 LTQSPGDELDGSGQQKNILVTAASGGVGHYADHMANLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIYITPDPSAMLNFAFNKLTFSKKQLVPLLLIPKRENLDFLVKSVKEGKLKTVINSKHPLSKA*YAWAESIDGHATGKII 560
            LT   G +LDG+G++ NILVTAASGGVGHYA  +A L N HVTA+CGARNIEFVKSLGADEVLDYKTP+GAALKSPSG+KYDAV+HCA GIP+S FEPNL  NGKVI ITP P+AM  +A  K+T SKKQLVPLLLIPK ENL+F+V  VKEGK+KTVI+SKHPLSKA  AWA+SIDGHATGKII
Sbjct:  142 LTNPAGLKLDGTGKKANILVTAASGGVGHYAVQLAKLANAHVTATCGARNIEFVKSLGADEVLDYKTPEGAALKSPSGKKYDAVVHCANGIPFSVFEPNLSENGKVIDITPGPNAMWTYAVKKITMSKKQLVPLLLIPKAENLEFMVNLVKEGKVKTVIDSKHPLSKAEDAWAKSIDGHATGKII 326
[Close]
BLAST of CF833750 vs. ExPASy Swiss-Prot
Match: QORH_SPIOL (Quinone-oxidoreductase homolog, chloroplastic OS=Spinacia oleracea GN=QOR PE=1 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 9.385e-72
Identity = 132/185 (71.35%), Postives = 155/185 (83.78%), Query Frame = 3 
Query:    6 LTQSPGDELDGSGQQKNILVTAASGGVGHYADHMANLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIYITPDPSAMLNFAFNKLTFSKKQLVPLLLIPKRENLDFLVKSVKEGKLKTVINSKHPLSKA*YAWAESIDGHATGKII 560
            LTQ    +LDGSG++KNIL+TAASGGVGHYA  +A LGNTHVTA+CGARN++FVK LGADEVLDYKTP+GA+L SPSG+KYD V+H A+GIPWSTFEPNL   GKVI +TP P+AM+ FA+ KLTFSKKQLVPLLLIPK  N +++V  VKE KLKTVI+SKHPLSK   AW+  + GHATGKII
Sbjct:  142 LTQFANIKLDGSGERKNILITAASGGVGHYAVQLAKLGNTHVTATCGARNLDFVKGLGADEVLDYKTPEGASLTSPSGKKYDYVVHGASGIPWSTFEPNLSEAGKVIDLTPGPTAMMTFAWKKLTFSKKQLVPLLLIPKIPNFEYVVNLVKEKKLKTVIDSKHPLSKGEDAWSRIMGGHATGKII 326
The following BLAST results are available for this feature:
BLAST of CF833750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
QORH_ARATH2.819e-7676.22Putative quinone-oxidoreductase homolog, chloropla... [more]
QORH_SPIOL9.385e-7271.35Quinone-oxidoreductase homolog, chloroplastic OS=S... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_04D01_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833750 ID=CF833750; Name=CF833750; organism=Citrus sinensis; type=EST; length=561bp
AGGNCCTTACTCAATCCCCTGGAGACGAGCTTGATGGAAGTGGGCAACAG
AAAAACATTCTAGTAACTGCTGCCTCAGGGGGTGTAGGTCACTATGCTGA
TCATATGGCGAATCTTGGAAACACGCACGTGACTGCCTCTTGTGGGGCTC
GCAACATTGAATTTGTCAAGAGTTTAGGGGCTGATGAGGTTCTTGATTAC
AAGACACCTGACGGGGCAGCTCTAAAGAGTCCATCTGGTCGAAAATACGA
TGCAGTGATCCACTGTGCAACAGGGATTCCCTGGTCTACTTTTGAGCCTA
ATCTGGGCACAAATGGGAAGGTGATATATATCACTCCTGACCCTAGTGCG
ATGCTGAATTTTGCTTTCAACAAACTTACCTTCTCCAAAAAGCAGCTGGT
ACCACTGCTGCTGATTCCCAAGCGTGAGAACCTAGATTTTCTAGTTAAGT
CGGTGAAGGAAGGAAAGCTTAAGACAGTAATCAACTCAAAGCATCCCCTG
AGCAAGGCATAATATGCTTGGGCTGAGAGTATTGATGGCCATGCTACAGG
GAAGATCATTG
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