CF833752

Overview
NameCF833752
Unique NameCF833752
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length339
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF833752_ssr177 microsatellite CF833752_ssr177:177..186. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CF833752 vs. ExPASy Swiss-Prot
Match: RLA31_ARATH (60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana GN=RPP3A PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.546e-16
Identity = 47/68 (69.12%), Postives = 52/68 (76.47%), Query Frame = 1 
Query:   52 MGVFTYVCKKNXXXXXXXXXXXXDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLGTPTSAVFHV 255
            MGVFT+VCK N            +LE+SA+STYELQRKLVQ SLSADSSGGVQSSFSL +PTSAVF V
Sbjct:    1 MGVFTFVCK-NGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSPTSAVFQV 67
[Close]
BLAST of CF833752 vs. ExPASy Swiss-Prot
Match: RLA32_ARATH (60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana GN=RPP3B PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.672e-16
Identity = 46/68 (67.65%), Postives = 52/68 (76.47%), Query Frame = 1 
Query:   52 MGVFTYVCKKNXXXXXXXXXXXXDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLGTPTSAVFHV 255
            MGVF++VCK              DLEASA+STY+LQRKLVQT+LSADSSGGVQSSFSL +PTSAVF V
Sbjct:    1 MGVFSFVCKSKGGEWTAKQHEG-DLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSPTSAVFVV 67
[Close]
BLAST of CF833752 vs. ExPASy Swiss-Prot
Match: RLA3_MAIZE (60S acidic ribosomal protein P3 OS=Zea mays GN=RPP3A PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 4.357e-11
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:   52 MGVFTYVCKKNXXXXXXXXXXXXDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLGTPTSAVFHV 255
            MGV+T+VC+ N            ++EASAA+ YELQR+LV  + +ADS  GVQSSFS+ TP+SAVF V
Sbjct:    1 MGVYTFVCRNNGGEWTAKQHSG-EIEASAATPYELQRRLVAAASAADSRYGVQSSFSMVTPSSAVFQV 67
[Close]
BLAST of CF833752 vs. ExPASy Swiss-Prot
Match: RLA3_ORYSJ (60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica GN=Os06g0701400 PE=3 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 7.431e-11
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:   52 MGVFTYVCKKNXXXXXXXXXXXXDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLGTPTSAVFHV 255
            MGV+T+VC+ +            +LEASAA+ YELQR+LV  + +ADS+ GVQSSFS+ +P+SAVF V
Sbjct:    1 MGVYTFVCRSSGDEWTAKQLKG-ELEASAATPYELQRRLVAAASAADSAAGVQSSFSMVSPSSAVFQV 67
The following BLAST results are available for this feature:
BLAST of CF833752 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RLA31_ARATH1.546e-1669.1260S acidic ribosomal protein P3-1 OS=Arabidopsis t... [more]
RLA32_ARATH7.672e-1667.6560S acidic ribosomal protein P3-2 OS=Arabidopsis t... [more]
RLA3_MAIZE4.357e-1152.9460S acidic ribosomal protein P3 OS=Zea mays GN=RPP... [more]
RLA3_ORYSJ7.431e-1151.4760S acidic ribosomal protein P3 OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_04D02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833752 ID=CF833752; Name=CF833752; organism=Citrus sinensis; type=EST; length=339bp
GCTGCTGCCTAACCCGATAACAGAACCCAAATGATACAGGCTTTACTGAA
AATGGGAGTTTTCACATACGTGTGCAAAAAAAATGGGGGATAATGGAGCG
GAAAGCAGATATAGGGGGGAGACTTAGAAGCCTCTGCAGCATCAACATAC
GAGCTCCAGAGAAAGCTGGTCCAGACCTCTCTCTCTGCTGATTCTTCTGG
TGGGGTCCAGTCCTCTTTCTCCCTCGGCACACCTACATCTGCTGTTTTCC
ACGTGATTATTGGTGGAGATGCTGGTAGCGGTTTCATTGGAGGTGGATCT
GCAACTTCATCCCCTTCAGGAAGCGGAGAACCAGCTGCT
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