CF833774 | Citrus Genome Database

Overview


Name	CF833774
Unique Name	CF833774
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	667

Libraries


Library Name	Type
Ruby Orange Ovary at Anthesis cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig2659	contig	Csv1_Contig2659:112..776.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF833774 vs. ExPASy Swiss-Prot
Match: RL23_ARATH (60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 5.164e-61
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 1

Query:  172 PSACVGDMVMATVKKGKPDLMKKVMPAVIVRQRKPWRIKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPIIASAANAIV 435
            PSACVGDMVMATVKKGKPDL KKV+PAVIVRQRKPWR KDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWP IASAANAIV
Sbjct:   53 PSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 140

HSP 2 Score: 63.929 bits (154), Expect = 5.164e-61
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 2

Query:   14 LSKRGRGGSAGNNFRMSLGLPVAATVNCADNTEGK 118
            +SKRGRGG++GN FRMSLGLPVAATVNCADNT  K
Sbjct:    1 MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAK 35

HSP 3 Score: 40.0466 bits (92), Expect = 5.164e-61
Identity = 19/19 (100.00%), Postives = 19/19 (100.00%), Query Frame = 3

Query:  114 AKNLYIISVKGIKGRLNRL 170
            AKNLYIISVKGIKGRLNRL
Sbjct:   34 AKNLYIISVKGIKGRLNRL 52

[Close]

BLAST of CF833774 vs. ExPASy Swiss-Prot
Match: RL23_TOBAC (60S ribosomal protein L23 OS=Nicotiana tabacum GN=RPL23 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.723e-61
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 1

Query:  172 PSACVGDMVMATVKKGKPDLMKKVMPAVIVRQRKPWRIKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPIIASAANAIV 435
            PSACVGDMVMATVKKGKPDL KKVMPAV+VRQRKPWR KDGVFMYFEDNAGVIVN KGEMKGSAITGPIGKECADLWP IASAANAIV
Sbjct:   53 PSACVGDMVMATVKKGKPDLRKKVMPAVVVRQRKPWRRKDGVFMYFEDNAGVIVNAKGEMKGSAITGPIGKECADLWPRIASAANAIV 140

HSP 2 Score: 65.855 bits (159), Expect = 6.723e-61
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 2

Query:   14 LSKRGRGGSAGNNFRMSLGLPVAATVNCADNTEGK 118
            +SKRGRGGSAGN FRMSLGLPVAAT+NCADNT  K
Sbjct:    1 MSKRGRGGSAGNKFRMSLGLPVAATINCADNTGAK 35

HSP 3 Score: 40.0466 bits (92), Expect = 6.723e-61
Identity = 19/19 (100.00%), Postives = 19/19 (100.00%), Query Frame = 3

Query:  114 AKNLYIISVKGIKGRLNRL 170
            AKNLYIISVKGIKGRLNRL
Sbjct:   34 AKNLYIISVKGIKGRLNRL 52

[Close]

BLAST of CF833774 vs. ExPASy Swiss-Prot
Match: RL23_TORRU (60S ribosomal protein L23 OS=Tortula ruralis GN=RPL23 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 7.882e-55
Identity = 81/88 (92.05%), Postives = 82/88 (93.18%), Query Frame = 1

Query:  172 PSACVGDMVMATVKKGKPDLMKKVMPAVIVRQRKPWRIKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPIIASAANAIV 435
            P+A VGDMVMATVKKGKPDL KKVMPAVIVRQRKPWR KDGVFMYFEDNAGVIVNPKGEM  SAITGPIGKECADLWP IASAANAIV
Sbjct:   52 PAAAVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNPSAITGPIGKECADLWPRIASAANAIV 139

HSP 2 Score: 61.6178 bits (148), Expect = 7.882e-55
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 2

Query:   14 LSKRGRGGSAGNNFRMSLGLPVAATVNCADNTEGK 118
            +SKRGRGGS+GN FRMSLGLPV A VNCADNT  K
Sbjct:    1 MSKRGRGGSSGNKFRMSLGLPVGAVVNCADNTGAK 35

HSP 3 Score: 30.0314 bits (66), Expect = 7.882e-55
Identity = 14/19 (73.68%), Postives = 17/19 (89.47%), Query Frame = 3

Query:  114 AKNLYIISVKGIKGRLNRL 170
            AKNLY+IS  G++GRLNRL
Sbjct:   34 AKNLYVIS-SGVRGRLNRL 51

[Close]

BLAST of CF833774 vs. ExPASy Swiss-Prot
Match: RL23_DANRE (60S ribosomal protein L23 OS=Danio rerio GN=rpl23 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.022e-50
Identity = 70/87 (80.46%), Postives = 77/87 (88.51%), Query Frame = 1

Query:  172 PSACVGDMVMATVKKGKPDLMKKVMPAVIVRQRKPWRIKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPIIASAANAI 432
            PSA VGDMVMATVKKGKP+L KKV PAV++RQRK +R KDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWP IAS A +I
Sbjct:   53 PSAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139

HSP 2 Score: 56.6102 bits (135), Expect = 5.022e-50
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 2

Query:   14 LSKRGRGGSAGNNFRMSLGLPVAATVNCADNTEGK 118
            +SKRGRGGS+G  FR+SLGLPV A +NCADNT  K
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAK 35

HSP 3 Score: 40.0466 bits (92), Expect = 5.022e-50
Identity = 19/19 (100.00%), Postives = 19/19 (100.00%), Query Frame = 3

Query:  114 AKNLYIISVKGIKGRLNRL 170
            AKNLYIISVKGIKGRLNRL
Sbjct:   34 AKNLYIISVKGIKGRLNRL 52

[Close]

BLAST of CF833774 vs. ExPASy Swiss-Prot
Match: RL23_RAT (60S ribosomal protein L23 OS=Rattus norvegicus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.106e-49
Identity = 69/87 (79.31%), Postives = 77/87 (88.51%), Query Frame = 1

Query:  172 PSACVGDMVMATVKKGKPDLMKKVMPAVIVRQRKPWRIKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPIIASAANAI 432
            P+A VGDMVMATVKKGKP+L KKV PAV++RQRK +R KDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWP IAS A +I
Sbjct:   53 PAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139

HSP 2 Score: 56.6102 bits (135), Expect = 1.106e-49
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 2

Query:   14 LSKRGRGGSAGNNFRMSLGLPVAATVNCADNTEGK 118
            +SKRGRGGS+G  FR+SLGLPV A +NCADNT  K
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAK 35

HSP 3 Score: 40.0466 bits (92), Expect = 1.106e-49
Identity = 19/19 (100.00%), Postives = 19/19 (100.00%), Query Frame = 3

Query:  114 AKNLYIISVKGIKGRLNRL 170
            AKNLYIISVKGIKGRLNRL
Sbjct:   34 AKNLYIISVKGIKGRLNRL 52

[Close]

BLAST of CF833774 vs. ExPASy Swiss-Prot
Match: RL23_PIG (60S ribosomal protein L23 OS=Sus scrofa GN=RPL23 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.106e-49
Identity = 69/87 (79.31%), Postives = 77/87 (88.51%), Query Frame = 1

Query:  172 PSACVGDMVMATVKKGKPDLMKKVMPAVIVRQRKPWRIKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPIIASAANAI 432
            P+A VGDMVMATVKKGKP+L KKV PAV++RQRK +R KDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWP IAS A +I
Sbjct:   53 PAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139

HSP 2 Score: 56.6102 bits (135), Expect = 1.106e-49
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 2

Query:   14 LSKRGRGGSAGNNFRMSLGLPVAATVNCADNTEGK 118
            +SKRGRGGS+G  FR+SLGLPV A +NCADNT  K
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAK 35

HSP 3 Score: 40.0466 bits (92), Expect = 1.106e-49
Identity = 19/19 (100.00%), Postives = 19/19 (100.00%), Query Frame = 3

Query:  114 AKNLYIISVKGIKGRLNRL 170
            AKNLYIISVKGIKGRLNRL
Sbjct:   34 AKNLYIISVKGIKGRLNRL 52

[Close]

BLAST of CF833774 vs. ExPASy Swiss-Prot
Match: RL23_MOUSE (60S ribosomal protein L23 OS=Mus musculus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.106e-49
Identity = 69/87 (79.31%), Postives = 77/87 (88.51%), Query Frame = 1

Query:  172 PSACVGDMVMATVKKGKPDLMKKVMPAVIVRQRKPWRIKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPIIASAANAI 432
            P+A VGDMVMATVKKGKP+L KKV PAV++RQRK +R KDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWP IAS A +I
Sbjct:   53 PAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139

HSP 2 Score: 56.6102 bits (135), Expect = 1.106e-49
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 2

Query:   14 LSKRGRGGSAGNNFRMSLGLPVAATVNCADNTEGK 118
            +SKRGRGGS+G  FR+SLGLPV A +NCADNT  K
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAK 35

HSP 3 Score: 40.0466 bits (92), Expect = 1.106e-49
Identity = 19/19 (100.00%), Postives = 19/19 (100.00%), Query Frame = 3

Query:  114 AKNLYIISVKGIKGRLNRL 170
            AKNLYIISVKGIKGRLNRL
Sbjct:   34 AKNLYIISVKGIKGRLNRL 52

[Close]

BLAST of CF833774 vs. ExPASy Swiss-Prot
Match: RL23_ICTPU (60S ribosomal protein L23 OS=Ictalurus punctatus GN=rpl23 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.106e-49
Identity = 69/87 (79.31%), Postives = 77/87 (88.51%), Query Frame = 1

Query:  172 PSACVGDMVMATVKKGKPDLMKKVMPAVIVRQRKPWRIKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPIIASAANAI 432
            P+A VGDMVMATVKKGKP+L KKV PAV++RQRK +R KDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWP IAS A +I
Sbjct:   53 PAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139

HSP 2 Score: 56.6102 bits (135), Expect = 1.106e-49
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 2

Query:   14 LSKRGRGGSAGNNFRMSLGLPVAATVNCADNTEGK 118
            +SKRGRGGS+G  FR+SLGLPV A +NCADNT  K
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAK 35

HSP 3 Score: 40.0466 bits (92), Expect = 1.106e-49
Identity = 19/19 (100.00%), Postives = 19/19 (100.00%), Query Frame = 3

Query:  114 AKNLYIISVKGIKGRLNRL 170
            AKNLYIISVKGIKGRLNRL
Sbjct:   34 AKNLYIISVKGIKGRLNRL 52

[Close]

BLAST of CF833774 vs. ExPASy Swiss-Prot
Match: RL23_HUMAN (60S ribosomal protein L23 OS=Homo sapiens GN=RPL23 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.106e-49
Identity = 69/87 (79.31%), Postives = 77/87 (88.51%), Query Frame = 1

Query:  172 PSACVGDMVMATVKKGKPDLMKKVMPAVIVRQRKPWRIKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPIIASAANAI 432
            P+A VGDMVMATVKKGKP+L KKV PAV++RQRK +R KDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWP IAS A +I
Sbjct:   53 PAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139

HSP 2 Score: 56.6102 bits (135), Expect = 1.106e-49
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 2

Query:   14 LSKRGRGGSAGNNFRMSLGLPVAATVNCADNTEGK 118
            +SKRGRGGS+G  FR+SLGLPV A +NCADNT  K
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAK 35

HSP 3 Score: 40.0466 bits (92), Expect = 1.106e-49
Identity = 19/19 (100.00%), Postives = 19/19 (100.00%), Query Frame = 3

Query:  114 AKNLYIISVKGIKGRLNRL 170
            AKNLYIISVKGIKGRLNRL
Sbjct:   34 AKNLYIISVKGIKGRLNRL 52

[Close]

BLAST of CF833774 vs. ExPASy Swiss-Prot
Match: RL23_BOVIN (60S ribosomal protein L23 OS=Bos taurus GN=RPL23 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.106e-49
Identity = 69/87 (79.31%), Postives = 77/87 (88.51%), Query Frame = 1

Query:  172 PSACVGDMVMATVKKGKPDLMKKVMPAVIVRQRKPWRIKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPIIASAANAI 432
            P+A VGDMVMATVKKGKP+L KKV PAV++RQRK +R KDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWP IAS A +I
Sbjct:   53 PAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139

HSP 2 Score: 56.6102 bits (135), Expect = 1.106e-49
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 2

Query:   14 LSKRGRGGSAGNNFRMSLGLPVAATVNCADNTEGK 118
            +SKRGRGGS+G  FR+SLGLPV A +NCADNT  K
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAK 35

HSP 3 Score: 40.0466 bits (92), Expect = 1.106e-49
Identity = 19/19 (100.00%), Postives = 19/19 (100.00%), Query Frame = 3

Query:  114 AKNLYIISVKGIKGRLNRL 170
            AKNLYIISVKGIKGRLNRL
Sbjct:   34 AKNLYIISVKGIKGRLNRL 52

The following BLAST results are available for this feature:

BLAST of CF833774 vs. ExPASy Swiss-Prot

BLAST of CF833774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79


Match Name	E-value	Identity	Description
RL23_ARATH	5.164e-61	95.45	60S ribosomal protein L23 OS=Arabidopsis thaliana ...	[more]
RL23_TOBAC	6.723e-61	94.32	60S ribosomal protein L23 OS=Nicotiana tabacum GN=...	[more]
RL23_TORRU	7.882e-55	92.05	60S ribosomal protein L23 OS=Tortula ruralis GN=RP...	[more]
RL23_DANRE	5.022e-50	80.46	60S ribosomal protein L23 OS=Danio rerio GN=rpl23 ...	[more]
RL23_RAT	1.106e-49	79.31	60S ribosomal protein L23 OS=Rattus norvegicus GN=...	[more]
RL23_PIG	1.106e-49	79.31	60S ribosomal protein L23 OS=Sus scrofa GN=RPL23 P...	[more]
RL23_MOUSE	1.106e-49	79.31	60S ribosomal protein L23 OS=Mus musculus GN=Rpl23...	[more]
RL23_ICTPU	1.106e-49	79.31	60S ribosomal protein L23 OS=Ictalurus punctatus G...	[more]
RL23_HUMAN	1.106e-49	79.31	60S ribosomal protein L23 OS=Homo sapiens GN=RPL23...	[more]
RL23_BOVIN	1.106e-49	79.31	60S ribosomal protein L23 OS=Bos taurus GN=RPL23 P...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS02_04D20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04D20, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF833774 ID=CF833774; Name=CF833774; organism=Citrus sinensis; type=EST; length=667bp
CTTTATCTGCCCATTGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAACA
ACTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGCT
GACAACACTGAGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCA
AAGGTCGCCTCAACCGTTTGACCGTCTGCCTGTGTTGGAGACATGGTTAT
GGCTACCGTGAAGAAAGGGAAGCCTGATCTTATGAAGAAGGTGATGCCCG
CCGTCATTGTAAGGCAGCGCAAGCCATGGCGCATAAAGGATGGTGTCTTC
ATGTACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAAT
GAAGGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTGCTGATTTGT
GGCCGATAATTGCAAGTGCAGCCAATGCTATCGTTTAAGACATTCAAGAC
CGATAACCTATATCATCCTTTTTGTTGCACTAAAAAGAAATCTGGTGAAG
TTTCATAGTAGGAAGGAGTAAAGCTTTTCTGTGAACTTTCTGTATGATTT
TGTTATTCTAGTTATGTAAGCGGTATGAAAGTTTGGAGGTTTGTTGATCT
TGATATCATTTTCATGCTGATTGTGTTTTTGAATTCAACTTCCGATGCAA
TACGGGTTCAATTTTAT