CF833775

Overview
NameCF833775
Unique NameCF833775
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6651 contig Csv1_Contig6651:430..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833775 vs. ExPASy Swiss-Prot
Match: PPA1_SOLLC (Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.827e-42
Identity = 80/175 (45.71%), Postives = 116/175 (66.29%), Query Frame = -1
Query:   52 RLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTGKAXXXXXXXXXXXXXXXLGIKIVFLTGRPEDQRNVTEANLKHAGFNTWEKLILKGSSHSGETAVVYKSSERKKLEMKGYRIIGNIGDQWSDLLGTNAGNRTFKLPDPMYY 576
            +++ + V++EA  +A+S+ L  DG+D+W+FD+DET L NLPYY+ + +G++ ++   F++WV  G A               LG K+  LTGR E  R+VT  NL +AGF+ W KLIL+GS   G+TA  YKS  R  +  +G+RI+GN GDQWSDLLG++   R+FKLP+PMYY
Sbjct:   79 KMEIDRVSDEAGEYAKSVDLGDDGRDVWIFDVDETLLSNLPYYSDHRYGLEVFDDVEFDKWVENGTAPALGSSLKLYQEVLKLGFKVFLLTGRSERHRSVTVENLMNAGFHDWHKLILRGSDDHGKTATTYKSERRNAMVEEGFRIVGNSGDQWSDLLGSSMSYRSFKLPNPMYY 253          
BLAST of CF833775 vs. ExPASy Swiss-Prot
Match: VSPA_SOYBN (Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.551e-40
Identity = 89/177 (50.28%), Postives = 118/177 (66.67%), Query Frame = -1
Query:   52 RLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTGKAXXXXXXXXXXXXXXXLGIKIVFLTGRPEDQRNVTEANLKHAGFNTWEKLILKG-SSHSGETAVVYKSSERKKLEMKGYRIIGNIGDQWSDLLGTNAG-NRTFKLPDPMYY 576
            R DS+ V  +A  +A+ L +    KD +VF ID T L N+PYY K+G+GV+ +N T+++EWVN G A               LG KI+FL+GR  D++ VTEANLK AG++TWEKLILK     S   AV YK++ R+KL  +GY I+G IGDQWSDLLG + G +RTFKLP+P+YY
Sbjct:   78 RSDSKTVNQQAYFYARDLEV--HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVSLGFKIIFLSGRTLDKQAVTEANLKKAGYHTWEKLILKDPQDPSTPNAVSYKTAAREKLIRQGYNIVGIIGDQWSDLLGGHRGESRTFKLPNPLYY 252          
BLAST of CF833775 vs. ExPASy Swiss-Prot
Match: VSPB_SOYBN (Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 5.894e-40
Identity = 88/176 (50.00%), Postives = 115/176 (65.34%), Query Frame = -1
Query:   52 RLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTGKAXXXXXXXXXXXXXXXLGIKIVFLTGRPEDQRNVTEANLKHAGFNTWEKLILKGSSHSGETAVVYKSSERKKLEMKGYRIIGNIGDQWSDLLGTNAG-NRTFKLPDPMYY 576
            R DS+ V  +A  +A    +  +  DI++F ID T L N+PYY K+G+GV+ +N T+++EWVN G A               LG KIVFL+GR  D+  VTEANLK AGF+TWE+LILK        A+ YKS+ R+ L  +GYRI+G IGDQWSDLLG + G +RTFKLP+PMYY
Sbjct:   79 RSDSKTVNQQAFFYASEREVHHN--DIFIFGIDNTVLSNIPYYEKHGYGVEEFNETLYDEWVNKGDAPALPETLKNYNKLLSLGFKIVFLSGRYLDKMAVTEANLKKAGFHTWEQLILKDPHLITPNALSYKSAMRENLLRQGYRIVGIIGDQWSDLLGDHRGESRTFKLPNPMYY 252          
BLAST of CF833775 vs. ExPASy Swiss-Prot
Match: S25K_SOYBN (Stem 31 kDa glycoprotein (Fragment) OS=Glycine max GN=VSP25 PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.112e-38
Identity = 87/174 (50.00%), Postives = 115/174 (66.09%), Query Frame = -1
Query:   61 RLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTGKAXXXXXXXXXXXXXXXLGIKIVFLTGRPEDQRNVTEANLKHAGFNTWEKLILKG-SSHSGETAVVYKSSERKKLEMKGYRIIGNIGDQWSDLLGTNAG-NRTFKLPDP 576
            R DS+ V  +A  +A+ L +    KD +VF ID T L N+PYY K+G+GV+ +N T+++EWVN G A               LG KI+FL+GR  D++ VTEANLK AG++TWEKLILK     S   AV YK++ R+KL  +GY I+G IGDQWSDLLG + G +RTFKLP+P
Sbjct:   75 RSDSKTVNQQAYFYARDLEV--HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVSLGFKIIFLSGRTLDKQAVTEANLKKAGYHTWEKLILKDPQDPSTPNAVSYKTAAREKLIRQGYNIVGIIGDQWSDLLGGHRGESRTFKLPNP 246          
BLAST of CF833775 vs. ExPASy Swiss-Prot
Match: VSP2_ARATH (Vegetative storage protein 2 OS=Arabidopsis thaliana GN=VSP2 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.114e-30
Identity = 74/174 (42.53%), Postives = 102/174 (58.62%), Query Frame = -1
Query:   52 DSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTG-KAXXXXXXXXXXXXXXXLGIKIVFLTGRPEDQRNVTEANLKHAGFNTWEKLILKGSSHSGETAVVYKSSERKKLEMKGYRIIGNIGDQWSDLLGTNAGNRTFKLPDPMYY 570
            DS+ V  EA  +A+ L L  D  ++W+FD+D+T L ++PYYAK G+G +  +P  +  W+ TG                  LGI+ + L+ R +  +NVT  NL+ AG   W+ LILK +  S    VVYKS  RK L  KGY I+GNIGDQW+DL+    G R FKLP+P+YY
Sbjct:   91 DSKTVCKEAYFYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKYGYGTEKTDPGAYWLWLGTGASTPGLPEALHLYQNIIELGIEPIILSDRWKLWKNVTLDNLEAAGVTYWKHLILKPNG-SNLRQVVYKSKVRKSLVKKGYNIVGNIGDQWADLVEDTPG-RVFKLPNPLYY 262          
BLAST of CF833775 vs. ExPASy Swiss-Prot
Match: VSP1_ARATH (Vegetative storage protein 1 OS=Arabidopsis thaliana GN=VSP1 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.101e-29
Identity = 71/174 (40.80%), Postives = 100/174 (57.47%), Query Frame = -1
Query:   52 DSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTGKA-XXXXXXXXXXXXXXXLGIKIVFLTGRPEDQRNVTEANLKHAGFNTWEKLILKGSSHSGETAVVYKSSERKKLEMKGYRIIGNIGDQWSDLLGTNAGNRTFKLPDPMYY 570
            DS+ V  EA  +A+ L L  D  ++W+FD+D+T L ++PYYAK G+G +   P  +  W+ +G++                LGI+ + ++ R +    VT  NLK  G   W+ LILK +  S  T VVYKS  R  L  KGY I+GNIGDQW+DL+    G R FKLP+P+YY
Sbjct:   96 DSKTVNKEAYFYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKYGYGTENTAPGAYWSWLESGESTPGLPETLHLYENLLELGIEPIIISDRWKKLSEVTVENLKAVGVTKWKHLILKPNG-SKLTQVVYKSKVRNSLVKKGYNIVGNIGDQWADLVEDTPG-RVFKLPNPLYY 267          
The following BLAST results are available for this feature:
BLAST of CF833775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PPA1_SOLLC2.827e-4245.71Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1... [more]
VSPA_SOYBN1.551e-4050.28Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE... [more]
VSPB_SOYBN5.894e-4050.00Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE... [more]
S25K_SOYBN1.112e-3850.00Stem 31 kDa glycoprotein (Fragment) OS=Glycine max... [more]
VSP2_ARATH1.114e-3042.53Vegetative storage protein 2 OS=Arabidopsis thalia... [more]
VSP1_ARATH2.101e-2940.80Vegetative storage protein 1 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_04D21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833775 ID=CF833775; Name=CF833775; organism=Citrus sinensis; type=EST; length=576bp
TTTTTTTTTTTTTTTCAAATCCCAGTAAACATTATTTATTAATTAGCCAC
CGTAATACATTGGGTCAGGCAGCTTGAACGTCCGATTGCCCGCGTTGGTG
CCCAGGAGATCGCTCCATTGATCACCTATGTTTCCAATAATTCTGTACCC
TTTCATCTCAAGCTTCTTTCTTTCACTTGATTTGTACACCACTGCTGTTT
CTCCTGAATGAGATGATCCCTTGAGGATGAGCTTCTCCCAAGTGTTGAAT
CCAGCATGCTTTAAATTAGCTTCTGTAACATTTCTCTGATCTTCTGGTCT
TCCCGTGAGGAATACAATCTTAATTCCAAGCAATAATAATTTTTTGTAAA
GCTTAAGGCTCTCTGGCAGCGGTGGTGCTTTTCCGGTGTTAACCCATTCA
TTAAACATAGTAGGGTTGTACGGCTTCACCCCGAATCCATTCTTAGCATA
ATATGGCAAATTACATAGCGAGGTTTCATCTATGTCGAAAACCCAAATGT
CCTTGCCGTCGCCAGCAAGCGTGAGGCTCTGAGCATGGAGAATGGCCTCA
TTAGCAACCACTTCAGAGTCCAGGCG
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