CF833824
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF833824 vs. ExPASy Swiss-Prot
Match: UBAX1_ARATH (UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1) HSP 1 Score: 268.47 bits (685), Expect = 2.672e-71 Identity = 133/207 (64.25%), Postives = 162/207 (78.26%), Query Frame = -1 Query: 142 ETVSSAPAPP----PENVSHNITFWRNGFTVDDGPLRGMDDPANASFLESIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGSDSPASAA-------LNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQK 729 E VSS+P P+ + H ITFW NGFTV+DGPLRG DP NA+F+ SI RSECP ELEPADKK VHV+L+ +R E+++EPPK ++ FQGVGRTLG S S +S+A +N AP+PS GLVVD PTTS+QLRLADGTR+V+RFN+HHT+RD+ FIDASRPG ++ YQL MGFPPKQLT+LDQT+EQAGIAN+VVIQK Sbjct: 215 EAVSSSPQQQQQEQPQRIMHTITFWLNGFTVNDGPLRGFSDPENAAFMNSISRSECPSELEPADKKIPVHVDLV-RRGENFTEPPKPKNPFQGVGRTLGASGSGSSSAPQASSAPMNVAPAPSRGLVVDPAAPTTSIQLRLADGTRLVSRFNNHHTVRDVRGFIDASRPGGSKEYQLLTMGFPPKQLTELDQTIEQAGIANAVVIQK 420
BLAST of CF833824 vs. ExPASy Swiss-Prot
Match: NSF1C_CHICK (NSFL1 cofactor p47 OS=Gallus gallus GN=NSFL1C PE=2 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 2.212e-33 Identity = 74/186 (39.78%), Postives = 114/186 (61.29%), Query Frame = -1 Query: 142 ITFWRNGFTVDDGPLRGMDDPANASFLESIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGS-------DSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQK 678 + W+ GF++D G LR DP+NA FL+ I R E P EL + +V++++ + R+E+Y +P AF G G+ LG + SPA A N A + SS + +D + P T++Q+RLADG R+V +FNH+H IRDI FI +RP A + FP K+LTD +QT+++A + N+V++Q+ Sbjct: 183 LKLWKTGFSLDSGELRSYQDPSNAQFLDDIRRGEVPAELRRLARGGQVNLDMEDHRDEEYVKPKSVFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKA-SSAIAIDESEPVTNIQIRLADGGRLVQKFNHNHRIRDIRLFIVDARPAMAATSFVLMTTFPNKELTDENQTLKEANLLNAVIVQR 367
BLAST of CF833824 vs. ExPASy Swiss-Prot
Match: NSF1C_PONAB (NSFL1 cofactor p47 OS=Pongo abelii GN=NSFL1C PE=2 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 2.888e-33 Identity = 75/186 (40.32%), Postives = 114/186 (61.29%), Query Frame = -1 Query: 142 ITFWRNGFTVDDGPLRGMDDPANASFLESIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGS-------DSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQK 678 + W++GF++D+G LR DP+NA FLESI R E P EL +V++++ + R+ED+ +P AF G G+ LG + SPA A N A + SS +++D + PTT++Q+RLADG R+V +FNH H I DI FI +RP A + FP K+L D QT+++A + N+V++Q+ Sbjct: 184 LKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKA-SSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNAVIVQR 368
BLAST of CF833824 vs. ExPASy Swiss-Prot
Match: NSF1C_HUMAN (NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2) HSP 1 Score: 142.124 bits (357), Expect = 2.888e-33 Identity = 75/186 (40.32%), Postives = 114/186 (61.29%), Query Frame = -1 Query: 142 ITFWRNGFTVDDGPLRGMDDPANASFLESIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGS-------DSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQK 678 + W++GF++D+G LR DP+NA FLESI R E P EL +V++++ + R+ED+ +P AF G G+ LG + SPA A N A + SS +++D + PTT++Q+RLADG R+V +FNH H I DI FI +RP A + FP K+L D QT+++A + N+V++Q+ Sbjct: 184 LKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKA-SSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNAVIVQR 368
BLAST of CF833824 vs. ExPASy Swiss-Prot
Match: NSF1C_BOVIN (NSFL1 cofactor p47 OS=Bos taurus GN=NSFL1C PE=2 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 6.435e-33 Identity = 75/186 (40.32%), Postives = 113/186 (60.75%), Query Frame = -1 Query: 142 ITFWRNGFTVDDGPLRGMDDPANASFLESIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGS-------DSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQK 678 + W+ GF++D+G LR DP+NA FLESI R E P EL +V++++ + R+ED+ +P AF G G+ LG + SPA A N A + SS + +D + PTT++Q+RLADG R+V +FNH H I DI FI +RP A + FP K+L D +QT+++A + N+V++Q+ Sbjct: 184 LKLWKTGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQILNTSSPAQQAENEAKA-SSSISIDESQPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQR 368
BLAST of CF833824 vs. ExPASy Swiss-Prot
Match: NSF1C_RAT (NSFL1 cofactor p47 OS=Rattus norvegicus GN=Nsfl1c PE=1 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.434e-32 Identity = 76/186 (40.86%), Postives = 113/186 (60.75%), Query Frame = -1 Query: 142 ITFWRNGFTVDDGPLRGMDDPANASFLESIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGS-------DSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQK 678 + W+ GF++D+G LR DP+NA FLESI R E P EL +V++++ + R+ED+ +P AF G G+ LG + SPA A N A + SS L+ +A PTT++Q+RLADG R+V +FNH H I DI FI +RP A + FP K+L D +QT+++A + N+V++Q+ Sbjct: 184 LKLWKTGFSLDNGDLRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLNTSSPAQQAENEAKASSSILINEAE-PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQR 368
BLAST of CF833824 vs. ExPASy Swiss-Prot
Match: NSF1C_MOUSE (NSFL1 cofactor p47 OS=Mus musculus GN=Nsfl1c PE=1 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.434e-32 Identity = 76/186 (40.86%), Postives = 113/186 (60.75%), Query Frame = -1 Query: 142 ITFWRNGFTVDDGPLRGMDDPANASFLESIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGS-------DSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQK 678 + W+ GF++D+G LR DP+NA FLESI R E P EL +V++++ + R+ED+ +P AF G G+ LG + SPA A N A + SS L+ +A PTT++Q+RLADG R+V +FNH H I DI FI +RP A + FP K+L D +QT+++A + N+V++Q+ Sbjct: 184 LKLWKTGFSLDNGDLRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLNTSSPAQQAENEAKASSSILINEAE-PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQR 368
BLAST of CF833824 vs. ExPASy Swiss-Prot
Match: UBX2B_MOUSE (UBX domain-containing protein 2B OS=Mus musculus GN=Ubxn2b PE=1 SV=2) HSP 1 Score: 137.887 bits (346), Expect = 5.447e-32 Identity = 72/190 (37.89%), Postives = 114/190 (60.00%), Query Frame = -1 Query: 142 ENVSHNITFWRNGFTVDDGPLRGMDDPANASFLESIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGS-----DSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQK 696 ++V + WRNGF++DDG LR DP NA FLES+ R E P EL+ +V++++ + ++++Y +P R AF G G+ LG +P+S ++ +++D ++PTT +Q+RLADG+R+V RFN H I D+ FI SRP A + FP K+LTD T+++A I N+V++Q+ Sbjct: 140 QDVQVLLKLWRNGFSLDDGELRPYSDPTNAQFLESVKRGETPLELQRLVHGAQVNLDMEDHQDQEYIKPRLRFKAFSGEGQKLGSLTPEIVSTPSSPEEEDKSILNAAVLIDDSMPTTKIQIRLADGSRLVQRFNSTHRILDVRDFIVRSRPEFATTDFILVTSFPSKELTDETVTLQEADILNTVILQQ 329
BLAST of CF833824 vs. ExPASy Swiss-Prot
Match: UBX2B_CHICK (UBX domain-containing protein 2B OS=Gallus gallus GN=UBXN2B PE=2 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 4.612e-31 Identity = 71/190 (37.37%), Postives = 113/190 (59.47%), Query Frame = -1 Query: 142 ENVSHNITFWRNGFTVDDGPLRGMDDPANASFLESIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGS-----DSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQK 696 ++V + WRNGF++DDG LR DP NA FLES+ R E P +L+ +V++++ + +E++Y +P R AF G G+ LG +P+S ++ +++D ++P T +Q+RLADG+R++ RFN H I+DI FI SRP A + FP K+LTD T+ +A I N+V++Q+ Sbjct: 174 QDVQILLKLWRNGFSLDDGELRSYSDPINAQFLESVKRGEIPVDLQRLVHGGQVNLDMEDHQEQEYVKPRLRFKAFSGEGQKLGSLTPEIVSTPSSPEEEDKSILNAPVLIDDSVPATKIQIRLADGSRLIQRFNQTHRIKDIRDFIIQSRPAFATTDFVLVTTFPNKELTDESLTLREADILNTVILQQ 363
BLAST of CF833824 vs. ExPASy Swiss-Prot
Match: UBX2B_RAT (UBX domain-containing protein 2B OS=Rattus norvegicus GN=Ubxn2b PE=1 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 7.866e-31 Identity = 70/190 (36.84%), Postives = 112/190 (58.95%), Query Frame = -1 Query: 142 ENVSHNITFWRNGFTVDDGPLRGMDDPANASFLESIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGS-----DSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQK 696 ++V + W NGF++DDG LR DP NA FLES+ R E P EL+ ++V +++ + ++++Y +P R AF G G+ LG +P+S ++ +++D ++PTT +Q+RLADG+R++ RFN H I D+ FI SRP A + FP K+LTD T++ A I N+V++Q+ Sbjct: 140 QDVQILLRLWSNGFSLDDGELRPYSDPTNAQFLESVKRGEIPLELQRLVHGSQVSLDMEDHQDQEYIKPRLRFKAFSGEGQKLGSLTPEIVSTPSSPEEEDKSILNAAVLIDDSVPTTKIQIRLADGSRLIQRFNSTHRILDVRDFIVQSRPEFATTDFILVTSFPSKELTDESVTLQDADILNTVILQQ 329 The following BLAST results are available for this feature:
BLAST of CF833824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CF833824 ID=CF833824; Name=CF833824; organism=Citrus sinensis; type=EST; length=729bpback to top |