CF833824

Overview
NameCF833824
Unique NameCF833824
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833824 vs. ExPASy Swiss-Prot
Match: UBAX1_ARATH (UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.672e-71
Identity = 133/207 (64.25%), Postives = 162/207 (78.26%), Query Frame = -1
Query:  142 ETVSSAPAPP----PENVSHNITFWRNGFTVDDGPLRGMDDPANASFLESIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGSDSPASAA-------LNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQK 729
            E VSS+P       P+ + H ITFW NGFTV+DGPLRG  DP NA+F+ SI RSECP ELEPADKK  VHV+L+ +R E+++EPPK ++ FQGVGRTLG S S +S+A       +N AP+PS GLVVD   PTTS+QLRLADGTR+V+RFN+HHT+RD+  FIDASRPG ++ YQL  MGFPPKQLT+LDQT+EQAGIAN+VVIQK
Sbjct:  215 EAVSSSPQQQQQEQPQRIMHTITFWLNGFTVNDGPLRGFSDPENAAFMNSISRSECPSELEPADKKIPVHVDLV-RRGENFTEPPKPKNPFQGVGRTLGASGSGSSSAPQASSAPMNVAPAPSRGLVVDPAAPTTSIQLRLADGTRLVSRFNNHHTVRDVRGFIDASRPGGSKEYQLLTMGFPPKQLTELDQTIEQAGIANAVVIQK 420          
BLAST of CF833824 vs. ExPASy Swiss-Prot
Match: NSF1C_CHICK (NSFL1 cofactor p47 OS=Gallus gallus GN=NSFL1C PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.212e-33
Identity = 74/186 (39.78%), Postives = 114/186 (61.29%), Query Frame = -1
Query:  142 ITFWRNGFTVDDGPLRGMDDPANASFLESIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGS-------DSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQK 678
            +  W+ GF++D G LR   DP+NA FL+ I R E P EL    +  +V++++ + R+E+Y +P     AF G G+ LG +        SPA  A N A + SS + +D + P T++Q+RLADG R+V +FNH+H IRDI  FI  +RP  A    +    FP K+LTD +QT+++A + N+V++Q+
Sbjct:  183 LKLWKTGFSLDSGELRSYQDPSNAQFLDDIRRGEVPAELRRLARGGQVNLDMEDHRDEEYVKPKSVFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKA-SSAIAIDESEPVTNIQIRLADGGRLVQKFNHNHRIRDIRLFIVDARPAMAATSFVLMTTFPNKELTDENQTLKEANLLNAVIVQR 367          
BLAST of CF833824 vs. ExPASy Swiss-Prot
Match: NSF1C_PONAB (NSFL1 cofactor p47 OS=Pongo abelii GN=NSFL1C PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.888e-33
Identity = 75/186 (40.32%), Postives = 114/186 (61.29%), Query Frame = -1
Query:  142 ITFWRNGFTVDDGPLRGMDDPANASFLESIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGS-------DSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQK 678
            +  W++GF++D+G LR   DP+NA FLESI R E P EL       +V++++ + R+ED+ +P     AF G G+ LG +        SPA  A N A + SS +++D + PTT++Q+RLADG R+V +FNH H I DI  FI  +RP  A    +    FP K+L D  QT+++A + N+V++Q+
Sbjct:  184 LKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKA-SSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNAVIVQR 368          
BLAST of CF833824 vs. ExPASy Swiss-Prot
Match: NSF1C_HUMAN (NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.888e-33
Identity = 75/186 (40.32%), Postives = 114/186 (61.29%), Query Frame = -1
Query:  142 ITFWRNGFTVDDGPLRGMDDPANASFLESIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGS-------DSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQK 678
            +  W++GF++D+G LR   DP+NA FLESI R E P EL       +V++++ + R+ED+ +P     AF G G+ LG +        SPA  A N A + SS +++D + PTT++Q+RLADG R+V +FNH H I DI  FI  +RP  A    +    FP K+L D  QT+++A + N+V++Q+
Sbjct:  184 LKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKA-SSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNAVIVQR 368          
BLAST of CF833824 vs. ExPASy Swiss-Prot
Match: NSF1C_BOVIN (NSFL1 cofactor p47 OS=Bos taurus GN=NSFL1C PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.435e-33
Identity = 75/186 (40.32%), Postives = 113/186 (60.75%), Query Frame = -1
Query:  142 ITFWRNGFTVDDGPLRGMDDPANASFLESIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGS-------DSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQK 678
            +  W+ GF++D+G LR   DP+NA FLESI R E P EL       +V++++ + R+ED+ +P     AF G G+ LG +        SPA  A N A + SS + +D + PTT++Q+RLADG R+V +FNH H I DI  FI  +RP  A    +    FP K+L D +QT+++A + N+V++Q+
Sbjct:  184 LKLWKTGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQILNTSSPAQQAENEAKA-SSSISIDESQPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQR 368          
BLAST of CF833824 vs. ExPASy Swiss-Prot
Match: NSF1C_RAT (NSFL1 cofactor p47 OS=Rattus norvegicus GN=Nsfl1c PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.434e-32
Identity = 76/186 (40.86%), Postives = 113/186 (60.75%), Query Frame = -1
Query:  142 ITFWRNGFTVDDGPLRGMDDPANASFLESIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGS-------DSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQK 678
            +  W+ GF++D+G LR   DP+NA FLESI R E P EL       +V++++ + R+ED+ +P     AF G G+ LG +        SPA  A N A + SS L+ +A  PTT++Q+RLADG R+V +FNH H I DI  FI  +RP  A    +    FP K+L D +QT+++A + N+V++Q+
Sbjct:  184 LKLWKTGFSLDNGDLRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLNTSSPAQQAENEAKASSSILINEAE-PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQR 368          
BLAST of CF833824 vs. ExPASy Swiss-Prot
Match: NSF1C_MOUSE (NSFL1 cofactor p47 OS=Mus musculus GN=Nsfl1c PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.434e-32
Identity = 76/186 (40.86%), Postives = 113/186 (60.75%), Query Frame = -1
Query:  142 ITFWRNGFTVDDGPLRGMDDPANASFLESIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGS-------DSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQK 678
            +  W+ GF++D+G LR   DP+NA FLESI R E P EL       +V++++ + R+ED+ +P     AF G G+ LG +        SPA  A N A + SS L+ +A  PTT++Q+RLADG R+V +FNH H I DI  FI  +RP  A    +    FP K+L D +QT+++A + N+V++Q+
Sbjct:  184 LKLWKTGFSLDNGDLRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLNTSSPAQQAENEAKASSSILINEAE-PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQR 368          
BLAST of CF833824 vs. ExPASy Swiss-Prot
Match: UBX2B_MOUSE (UBX domain-containing protein 2B OS=Mus musculus GN=Ubxn2b PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 5.447e-32
Identity = 72/190 (37.89%), Postives = 114/190 (60.00%), Query Frame = -1
Query:  142 ENVSHNITFWRNGFTVDDGPLRGMDDPANASFLESIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGS-----DSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQK 696
            ++V   +  WRNGF++DDG LR   DP NA FLES+ R E P EL+      +V++++ + ++++Y +P  R  AF G G+ LG        +P+S         ++ +++D ++PTT +Q+RLADG+R+V RFN  H I D+  FI  SRP  A    +    FP K+LTD   T+++A I N+V++Q+
Sbjct:  140 QDVQVLLKLWRNGFSLDDGELRPYSDPTNAQFLESVKRGETPLELQRLVHGAQVNLDMEDHQDQEYIKPRLRFKAFSGEGQKLGSLTPEIVSTPSSPEEEDKSILNAAVLIDDSMPTTKIQIRLADGSRLVQRFNSTHRILDVRDFIVRSRPEFATTDFILVTSFPSKELTDETVTLQEADILNTVILQQ 329          
BLAST of CF833824 vs. ExPASy Swiss-Prot
Match: UBX2B_CHICK (UBX domain-containing protein 2B OS=Gallus gallus GN=UBXN2B PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.612e-31
Identity = 71/190 (37.37%), Postives = 113/190 (59.47%), Query Frame = -1
Query:  142 ENVSHNITFWRNGFTVDDGPLRGMDDPANASFLESIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGS-----DSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQK 696
            ++V   +  WRNGF++DDG LR   DP NA FLES+ R E P +L+      +V++++ + +E++Y +P  R  AF G G+ LG        +P+S         ++ +++D ++P T +Q+RLADG+R++ RFN  H I+DI  FI  SRP  A    +    FP K+LTD   T+ +A I N+V++Q+
Sbjct:  174 QDVQILLKLWRNGFSLDDGELRSYSDPINAQFLESVKRGEIPVDLQRLVHGGQVNLDMEDHQEQEYVKPRLRFKAFSGEGQKLGSLTPEIVSTPSSPEEEDKSILNAPVLIDDSVPATKIQIRLADGSRLIQRFNQTHRIKDIRDFIIQSRPAFATTDFVLVTTFPNKELTDESLTLREADILNTVILQQ 363          
BLAST of CF833824 vs. ExPASy Swiss-Prot
Match: UBX2B_RAT (UBX domain-containing protein 2B OS=Rattus norvegicus GN=Ubxn2b PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.866e-31
Identity = 70/190 (36.84%), Postives = 112/190 (58.95%), Query Frame = -1
Query:  142 ENVSHNITFWRNGFTVDDGPLRGMDDPANASFLESIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGS-----DSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQK 696
            ++V   +  W NGF++DDG LR   DP NA FLES+ R E P EL+     ++V +++ + ++++Y +P  R  AF G G+ LG        +P+S         ++ +++D ++PTT +Q+RLADG+R++ RFN  H I D+  FI  SRP  A    +    FP K+LTD   T++ A I N+V++Q+
Sbjct:  140 QDVQILLRLWSNGFSLDDGELRPYSDPTNAQFLESVKRGEIPLELQRLVHGSQVSLDMEDHQDQEYIKPRLRFKAFSGEGQKLGSLTPEIVSTPSSPEEEDKSILNAAVLIDDSVPTTKIQIRLADGSRLIQRFNSTHRILDVRDFIVQSRPEFATTDFILVTSFPSKELTDESVTLQDADILNTVILQQ 329          
The following BLAST results are available for this feature:
BLAST of CF833824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
UBAX1_ARATH2.672e-7164.25UBA and UBX domain-containing protein At4g15410 OS... [more]
NSF1C_CHICK2.212e-3339.78NSFL1 cofactor p47 OS=Gallus gallus GN=NSFL1C PE=2... [more]
NSF1C_PONAB2.888e-3340.32NSFL1 cofactor p47 OS=Pongo abelii GN=NSFL1C PE=2 ... [more]
NSF1C_HUMAN2.888e-3340.32NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 ... [more]
NSF1C_BOVIN6.435e-3340.32NSFL1 cofactor p47 OS=Bos taurus GN=NSFL1C PE=2 SV... [more]
NSF1C_RAT1.434e-3240.86NSFL1 cofactor p47 OS=Rattus norvegicus GN=Nsfl1c ... [more]
NSF1C_MOUSE1.434e-3240.86NSFL1 cofactor p47 OS=Mus musculus GN=Nsfl1c PE=1 ... [more]
UBX2B_MOUSE5.447e-3237.89UBX domain-containing protein 2B OS=Mus musculus G... [more]
UBX2B_CHICK4.612e-3137.37UBX domain-containing protein 2B OS=Gallus gallus ... [more]
UBX2B_RAT7.866e-3136.84UBX domain-containing protein 2B OS=Rattus norvegi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04F10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833824 ID=CF833824; Name=CF833824; organism=Citrus sinensis; type=EST; length=729bp
TTTTTTTTTTAAAAGAAAAAACCACGGACACTGAATCTTTACCTCAACAA
ACACAATTCCAAATCAAACTCTGAGATTTTTTCTGTATAATAAATATTAA
ATTAAGCAAGTACTACTTGGAAGCTGACTAAGTAACTACAGTTTCTGGAT
AACCACTGAGTTAGCAATGCCAGCTTGCTCTACAGTCTGGTCTAGATCGG
TGAGTTGCTTTGGAGGGAACCCCATTGCCTGTAGTTGGTAGTTTCTTGCA
CTGCCGGGTCTTGATGCATCAATGAATCTGTGAATATCTCTGATAGTATG
GTGGTGGTTGAAGCGAGCAACCATGCGAGTACCATCTGCTAACCTCAGCT
GGACAGAGGTAGTCGGTAAAGTTGCATCCACAACTAGACCAGATGATGGT
GATGGAGCAGTGTTTAAGGCAGCAGAGGCAGGAGAGTCACTGCCACCCAA
AGTTCTCCCTACACCCTGGAATGCAGATCGGCGCTTCGGTGGTTCAGAGT
AGTCCTCCTCTCGCTTATTGATGAGTTCAACATGCACACGAGTTTTCTTA
TCAGCTGGTTCAAGCTCCCTTGGGCACTCGGACCTCATGATGCTCTCCAA
AAAGGAAGCATTTGCAGGATCATCCATCCCCCGCAATGGACCATCATCTA
CAGTGAACCCATTCCTCCAAAAAGTGATGTTGTGTGAGACATTTTCAGGC
GGAGGAGCTGGAGCAGATGATACTGTCTC
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