CF833826

Overview
NameCF833826
Unique NameCF833826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length432
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7082 contig Csv1_Contig7082:1199..1630. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833826 vs. ExPASy Swiss-Prot
Match: PAPSS_URECA (Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase OS=Urechis caupo PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.556e-14
Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = -3
Query:  266 YDKTQGKMAFFDPSRGQEFLFISGTKMRTLARSKENPPDGFMSPGGWKVLVESY 427
            Y+KT+  M F+DP R  EF+FISGTKMR +AR+ E PP+GFM+P  WK++VE Y
Sbjct:  550 YNKTKSAMDFYDPERHDEFMFISGTKMRGMARAGETPPNGFMAPSAWKIMVEYY 603          
BLAST of CF833826 vs. ExPASy Swiss-Prot
Match: PAPS2_HUMAN (Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 OS=Homo sapiens GN=PAPSS2 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.326e-13
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = -3
Query:  257 YDKTQGKMAFFDPSRGQEFLFISGTKMRTLARSKENPPDGFMSPGGWKVLVESYDSM 427
            Y+K +  M F+DP+R  EF FISGT+MR LAR  ENPPDGFM+P  WKVL + Y S+
Sbjct:  555 YNKAKKAMDFYDPARHNEFDFISGTRMRKLAREGENPPDGFMAPKAWKVLTDYYRSL 611          
BLAST of CF833826 vs. ExPASy Swiss-Prot
Match: PAPS2_MOUSE (Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 OS=Mus musculus GN=Papss2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.857e-13
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = -3
Query:  257 YDKTQGKMAFFDPSRGQEFLFISGTKMRTLARSKENPPDGFMSPGGWKVLVESYDSM 427
            Y+K +  M F+DP+R +EF FISGT+MR LAR  E+PPDGFM+P  WKVL + Y S+
Sbjct:  561 YNKIKKAMDFYDPARHEEFDFISGTRMRKLAREGEDPPDGFMAPKAWKVLTDYYRSL 617          
BLAST of CF833826 vs. ExPASy Swiss-Prot
Match: PAPS1_MOUSE (Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 OS=Mus musculus GN=Papss1 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.043e-11
Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = -3
Query:  248 YDKTQGKMAFFDPSRGQEFLFISGTKMRTLARSKENPPDGFMSPGGWKVLVESYDSMTPA 427
            Y+K + +M ++D    ++F FISGT+MR LAR  + PP+GFM+P  W VLVE Y S+  A
Sbjct:  565 YNKKKKRMDYYDSEHHEDFEFISGTRMRKLAREGQKPPEGFMAPKAWTVLVEYYKSLEKA 624          
The following BLAST results are available for this feature:
BLAST of CF833826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PAPSS_URECA4.556e-1459.26Bifunctional 3'-phosphoadenosine 5'-phosphosulfate... [more]
PAPS2_HUMAN1.326e-1359.65Bifunctional 3'-phosphoadenosine 5'-phosphosulfate... [more]
PAPS2_MOUSE3.857e-1357.89Bifunctional 3'-phosphoadenosine 5'-phosphosulfate... [more]
PAPS1_MOUSE8.043e-1148.33Bifunctional 3'-phosphoadenosine 5'-phosphosulfate... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_04F11_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833826 ID=CF833826; Name=CF833826; organism=Citrus sinensis; type=EST; length=432bp
ATGCCATGGTAATGCAACATGCCACAAGAGTGGCACTTTAATTACATAAA
GAGGCAAATCTTGTGTCTCTGTACCATTGCCTCACCTTGGTTTTATTAAA
AAATCTGGACAGAGAATTTTTTTCCCAATCTGGATGGGACAGTTGACATT
GGAGACATCTCGGTTGTAAAGTTTCTCCCAATCCAATGACAAATACATTA
TCATACATCAATTTCATCTAATCTGGAACAGGGACTTTGCCATTGTCAGC
TGGAGTCATACTGTCATATGATTCAACCAGCACTTTCCAGCCACCAGGGC
TCATAAATCCATCCGGAGGATTCTCTTTGCTCCTTGCGAGCGTTCGCATC
TTGGTGCCTGATATGAAGAGGAACTCCTGCCCCCTTGAAGGATCAAAGAA
TGCCATTTTGCCTTGAGTCTTGTCATACCCTG
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