CF833859

Overview
NameCF833859
Unique NameCF833859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length508
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:1180..1687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF833859 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 8.592e-36
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = -2 
Query:  280 SELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 507
            +ELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIK+VEKKDPTG
Sbjct:  361 AELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 436
[Close]
BLAST of CF833859 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 8.592e-36
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -2 
Query:  280 SELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 507
            +ELVTKIDRRSGKELEKEPKFLKNGDAGMVKM+PTKPMVVETFS YPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG
Sbjct:  361 AELVTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
[Close]
BLAST of CF833859 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.914e-35
Identity = 71/76 (93.42%), Postives = 76/76 (100.00%), Query Frame = -2 
Query:  280 SELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 507
            +EL+TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG
Sbjct:  361 AELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
[Close]
BLAST of CF833859 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.914e-35
Identity = 71/76 (93.42%), Postives = 76/76 (100.00%), Query Frame = -2 
Query:  280 SELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 507
            +EL+TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG
Sbjct:  361 AELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
[Close]
BLAST of CF833859 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 7.274e-35
Identity = 71/76 (93.42%), Postives = 75/76 (98.68%), Query Frame = -2 
Query:  280 SELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 507
            +EL+TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIK+VEKKDPTG
Sbjct:  361 AELMTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 436
[Close]
BLAST of CF833859 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 9.499e-35
Identity = 70/76 (92.11%), Postives = 75/76 (98.68%), Query Frame = -2 
Query:  280 SELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 507
            SE++TKIDRRSGKE+EKEPKFLKNGDAGMVKM PTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIKSV+KKDPTG
Sbjct:  361 SEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTG 436
[Close]
BLAST of CF833859 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.241e-34
Identity = 69/76 (90.79%), Postives = 76/76 (100.00%), Query Frame = -2 
Query:  280 SELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 507
            +E++TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIK+V+KKDPTG
Sbjct:  361 AEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVDKKDPTG 436
[Close]
BLAST of CF833859 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.116e-34
Identity = 68/76 (89.47%), Postives = 76/76 (100.00%), Query Frame = -2 
Query:  280 SELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 507
            +E++TKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGV+K+V+KKDPTG
Sbjct:  361 AEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVVKNVDKKDPTG 436
[Close]
BLAST of CF833859 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 4.715e-34
Identity = 70/76 (92.11%), Postives = 74/76 (97.37%), Query Frame = -2 
Query:  280 SELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 507
            +E++TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETFS YPPLGRFAVRDMRQTVAVGVIKSVEKKDP+G
Sbjct:  361 AEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSAYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSG 436
[Close]
BLAST of CF833859 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 8.042e-34
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = -2 
Query:  280 SELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 507
            +E+ TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETF  YPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG
Sbjct:  361 AEIQTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFMSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
The following BLAST results are available for this feature:
BLAST of CF833859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
EF1A_ORYSJ8.592e-3696.05Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_MAIZE8.592e-3696.05Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_VICFA1.914e-3593.42Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_PEA1.914e-3593.42Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A_SOYBN7.274e-3593.42Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_ARATH9.499e-3592.11Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A_TOBAC1.241e-3490.79Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_SOLLC2.116e-3489.47Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A_MANES4.715e-3492.11Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A2_DAUCA8.042e-3492.11Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04G07_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833859 ID=CF833859; Name=CF833859; organism=Citrus sinensis; type=EST; length=508bp
TTTTTTTTTTTTTAAAACTTCACAACTCAATTTAGTGCTATTAACCATTT
TCAGAATATAAAAATCCGAACACCCACCACAGCCAGTCAAGCAGAAAGAT
AACATCCCAATTGCTCAACAGCAAACTGGTGGAAGCAAATAGGGCTGTTT
GCAGAAACATTGATGCAAAACAAAAACAGACAAGAAAATAAAAAAAGACA
GAAAATAAACCCTAACTATTGTAGACAGACCCATAAAAATTTCTCATTTC
TTCTTGGCTGCGGACTTGGTGACCTTCGCACCTGTGGGATCCTTCTTCTC
AACACTCTTGATAACACCCACAGCAACAGTCTGACGCATGTCCCTAACAG
CAAAACGACCAAGGGGTGGGTAATCGGAGAAGGTTTCAACAACCATGGGC
TTGGTGGGAATCATCTTAACCATTCCGGCGTCTCCATTCTTCAAGAACTT
GGGCTCCTTCTCAAGCTCCTTGCCTGATCGCCTATCAATCTTCGTCACGA
GCTCAGAA
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