CF833894

Overview
NameCF833894
Unique NameCF833894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10926 contig Csv1_Contig10926:948..1582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833894 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.685e-36
Identity = 72/114 (63.16%), Postives = 87/114 (76.32%), Query Frame = 3
Query:   39 AALKLVPSLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 380
            A  KL   + LCM V+    A AITCGQV+ SLAPCIG++RSGG +P  CCNG+R++N  ARTT DRQTACNCLK  A SI  +N NNAAGLPG CGV++PYKISTST+C+ V+
Sbjct:    5 AVTKLALVVALCMAVS---VAHAITCGQVTSSLAPCIGYVRSGGAVPPACCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CF833894 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.685e-36
Identity = 70/114 (61.40%), Postives = 89/114 (78.07%), Query Frame = 3
Query:   39 AALKLVPSLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 380
            A  KL   + LCM+V+ P+ AQAITCGQVS +LAPCI ++R GG +P  CCNG+R++N  ARTTPDRQ ACNCLKQ + S+P +N NNAA LPG CGV+IPY+IS ST+C+ V+
Sbjct:    5 AMTKLALVVALCMVVSVPI-AQAITCGQVSSNLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CF833894 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.812e-36
Identity = 68/114 (59.65%), Postives = 89/114 (78.07%), Query Frame = 3
Query:   39 AALKLVPSLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 380
            A  KL   + LCM+V+ P+ AQA+TCGQVS +LAPCI ++R GG +P  CCNG+R++N  A+TT DRQTACNCLKQ + S+P +N NNAA LPG CGV++PYKIS ST+C+ V+
Sbjct:    5 AMTKLALVVALCMVVSVPI-AQALTCGQVSSNLAPCIAYVRGGGAVPPACCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of CF833894 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.683e-34
Identity = 68/113 (60.18%), Postives = 85/113 (75.22%), Query Frame = 3
Query:   42 ALKLVPSLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 380
            A+ ++ + V CM+V  P + +A++CGQVS SLAPCI +L  GG +P  CC+GV+SLN+AA+TTPDRQ AC CLK A  SI  +N  NAA  PG CGVSIPYKIS STDCSKV+
Sbjct:    5 AMMVLCAGVTCMVVGAPYT-EALSCGQVSSSLAPCISYLTKGGAVPPACCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of CF833894 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.003e-33
Identity = 67/91 (73.63%), Postives = 73/91 (80.22%), Query Frame = 3
Query:  108 ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 380
            ITCGQVS SLAPCI +LR+GG +P  CCNGVRSLN AA+TT DRQ ACNCLK A  SI  LNLN AAGLPG CGVS+PYKIS STDC  V+
Sbjct:    1 ITCGQVSSSLAPCINYLRAGGVVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CF833894 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.980e-33
Identity = 70/117 (59.83%), Postives = 85/117 (72.65%), Query Frame = 3
Query:   36 MAALKLVPSLVL-CMLVTGPLSAQA-ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 380
            MA L  +  LVL CM+V GP+++ A ++CG VSG +APCIG+L   GP+P  CC GV +LN  ARTTPDRQ AC CL  AA S P+LN   AAGLP ACGV+IPYKIS ST+C+ VR
Sbjct:    1 MAGLMKLACLVLACMIVAGPITSNAALSCGTVSGYVAPCIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CF833894 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 8.494e-33
Identity = 65/113 (57.52%), Postives = 83/113 (73.45%), Query Frame = 3
Query:   39 AALKLVPSLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 377
            A +KL  +++LC++V  P +   ITCG VS  LAPCIG+L+ GGP+   CC G+++LNAAA TTPDR+TACNCLK AA +I  +N   AAGLPG CGV IPY IS ST+C+ V
Sbjct:    5 AVIKLACAVLLCIVVAAPYAEAGITCGMVSSKLAPCIGYLK-GGPLGGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAV 116          
BLAST of CF833894 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.109e-32
Identity = 64/114 (56.14%), Postives = 83/114 (72.81%), Query Frame = 3
Query:   39 AALKLVPSLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 380
            A +KL   + LCM V+    A AITC QVS +LAPCI ++RSGG +P  CCNG++++N  A+TTPDRQ ACNCLK  A S+  +N  NA  LPG CGV++PYKISTST+C+ V+
Sbjct:    5 AVIKLALVVALCMAVS---VAHAITCSQVSANLAPCINYVRSGGAVPPACCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CF833894 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.109e-32
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = 3
Query:  108 ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 380
            ITCGQVS SLAPCIG++R GG +P  CCNG+R++N  ARTTPDR+TACNCLKQ + SI  +N NNAA LPG CGV+IPYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAVPPACCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of CF833894 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.449e-32
Identity = 66/115 (57.39%), Postives = 85/115 (73.91%), Query Frame = 3
Query:   36 MAALKLVPSLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 380
            MA++K+V   ++  +V  P++  AITCG+V  +LAPC+G+L+ G      CC GVR+LN+AA TTPDRQ ACNCLK AA SI  LN NNAA LPG C V+IPYKISTST+C+ +R
Sbjct:    1 MASMKVVCVALIMCIVIAPMAESAITCGRVDTALAPCLGYLQGGPGPSAQCCGGVRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
The following BLAST results are available for this feature:
BLAST of CF833894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP_MALDO3.685e-3663.16Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_PRUDU3.685e-3661.40Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_PRUAV4.812e-3659.65Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP_HELAN7.683e-3460.18Non-specific lipid-transfer protein OS=Helianthus ... [more]
LTP1_MORNI1.003e-3373.63Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP2_BRANA4.980e-3359.83Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTP_SPIOL8.494e-3357.52Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP_PYRCO1.109e-3256.14Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP1_PRUAR1.109e-3268.13Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP_CICAR1.449e-3257.39Non-specific lipid-transfer protein OS=Cicer ariet... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04H16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04H16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833894 ID=CF833894; Name=CF833894; organism=Citrus sinensis; type=EST; length=636bp
CAGGAATTCGGCACCACTTTAAGGAGAAATCTCAAATGGCTGCCCTCAAG
CTTGTCCCTTCTTTGGTTCTGTGCATGTTGGTGACTGGTCCCCTGAGTGC
TCAGGCCATAACATGTGGGCAGGTGAGTGGCTCATTGGCACCATGCATCG
GTTTCTTGAGATCGGGCGGCCCTATACCTATGCCATGCTGCAACGGCGTC
AGGTCTCTCAACGCTGCCGCCAGAACCACACCTGACCGCCAAACTGCATG
CAACTGCTTGAAGCAAGCCGCCAGATCAATCCCTAGCCTCAACCTTAATA
ATGCTGCTGGTCTTCCAGGAGCTTGTGGAGTCAGCATTCCTTACAAGATC
AGCACCTCCACTGACTGCTCTAAGGTCAGGTGAACAGGAATCTGGGCCGT
TGATTTTCAGGTTTAAGTTGACGGAGTAGAATAAATGTATAATAATAAGG
ACATTTTTGTGTCCGATTTATGAGTCTCTCTCTACACTTTGTACTGCGAG
TCTCGTTCGCGCCCTCGTTTCATGTTATGTTTTATTGTCTTTGCTTTTCA
TGTCATCGCCAGTTTGTGTCTATTCTGTTTATTAAATGAAATCTTGCCTT
GCGTTCAGTTTAACAACCTTAAAAAAAAAAAAAAAA
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